Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1308 ATGAACGGAGATTACTTGGAGTTGCAGTTCGAAAATACAATAGGAGATGCTATTTCCAGAATCCAATTCGCACCCAACTCTAACAATCTTCTTATATCTTCTTGGGATTCTAGTCTTCGCTTATACGATGTTGACAACTCTGTGCTTAGACTTCAAGCCCCGTCAGAAGCTGCGCTTCTGGATTGTTGTTTCCAGGACGACTTGGTTGCTTTCACAACTGGTTCTGATGGATTAATCCGAAGGTATAACTTGCATTCAGGAACTATTGATAAAATGGGTAGTCATGATGATATGGCAACATGCATTGGATATTCCAAGGAAATATGTCAGTTGATCACAGCCGGATTTGACAAGAAGATATTGTTGTGGGACTTCCGTATGGAGAATACTCTTTCATGCTGGAAAAATCTAGATGCAGAGGTGAACTCCATGTCTATCTCTGGGCTAAATCTGACTGTTGGAATTGAAACATCGGTGCATATTTATGATTTGCGTTACTTCGACAAGCCGGTTCAATCAAAGGAACCACACAAGGGTACACAAATAAGATGTGTCAGTTCAATTCCTTATGCAAAAGGATTTGCAGTTGGATCAGTAGATGGGCGGGTAGCATTACAGATTTCCGATTCATCTAGTTCAAATGATATTGGATATATATTCCGGTGTCATCCAAAATCAAAGGACGGAAGGCATCATTTGGCATCAGTTAATGACATTATATTCAGTCCACTTGTTAGTGGTGCTTTTGTCACTGGTGACAACGAAGGTTACGTAACGTTATGGGACGCTGGAAGTAAGAGAAGACTAATTGAGTTGCCTAGGCACCCAAATAGTGTGGCATCCTTGTCATTCAACCACGTGGGGCACCTTCTGGCTGTAGCTTCAAGTTACACATACCACGATGCAAAGGAACTAGAAGGGACTCCTCTTGTATTCATCCACAATATGGACAACGTCGATATTAGATCAGTTTCTTCTGGAAGTTCTGGAAATGGTGCTTTTCTGAAGTGCATGTATGGAAAGGCTGAGGAAAAAAAGGTTGCTTCTAAATTACTACCAGAGACTCCCTCTCTCTCACTCACTCCCACTCTCTCTCTCTCTCTCTCGTGTTTGCGCGGAGCCATGTCGGACGAGGAGCACCACTTCGAGTCCAAAGCCGATGCCGGAGCTTCAAAGACCTTCCCTCAGCAAGCTGGCACCATCCGAAAGAACGGTTACATTGTGATCAAGAACAGGCCTTGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCTAAGTGTCACTTTGTTGGCATTGACATTTTTACTGGGAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAACTGTGATGTCCCACATGTCAATCGCACTGACTACCAGCTGATTGATATCTCAGAAGATGGATTTGTGAGTCTGCTGACTGAAACTGGTGATACTAAGGATGACCTTAGGCTTCCTACCGATGAAAATCTGCTTAAACAGATCAAGGATGGATTTGCCGAGGGTAAAGATTTGGTTGTGAGTGTCATGTCTGCCATGGGTGAGGAGCAGATTTGTGCCCTAAAGGACATTGGCCCCAAGTAA 1602 0.4357 MNGDYLELQFENTIGDAISRIQFAPNSNNLLISSWDSSLRLYDVDNSVLRLQAPSEAALLDCCFQDDLVAFTTGSDGLIRRYNLHSGTIDKMGSHDDMATCIGYSKEICQLITAGFDKKILLWDFRMENTLSCWKNLDAEVNSMSISGLNLTVGIETSVHIYDLRYFDKPVQSKEPHKGTQIRCVSSIPYAKGFAVGSVDGRVALQISDSSSSNDIGYIFRCHPKSKDGRHHLASVNDIIFSPLVSGAFVTGDNEGYVTLWDAGSKRRLIELPRHPNSVASLSFNHVGHLLAVASSYTYHDAKELEGTPLVFIHNMDNVDIRSVSSGSSGNGAFLKCMYGKAEEKKVASKLLPETPSLSLTPTLSLSLSCLRGAMSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGDTKDDLRLPTDENLLKQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1308 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 271 IPR001680 GO:0005515
Glsi09g1308 533 CDD S1_eIF5A 460 530 - -
Glsi09g1308 533 Gene3D - 4 324 IPR015943 GO:0005515
Glsi09g1308 533 PANTHER MRNA EXPORT FACTOR AND BUB3 8 316 - -
Glsi09g1308 533 SMART WD40_4 45 83 IPR001680 GO:0005515
Glsi09g1308 533 SMART WD40_4 167 209 IPR001680 GO:0005515
Glsi09g1308 533 SMART WD40_4 213 262 IPR001680 GO:0005515
Glsi09g1308 533 SMART WD40_4 85 124 IPR001680 GO:0005515
Glsi09g1308 533 SMART WD40_4 7 43 IPR001680 GO:0005515
Glsi09g1308 533 SMART WD40_4 127 163 IPR001680 GO:0005515
Glsi09g1308 533 SMART WD40_4 265 315 IPR001680 GO:0005515
Glsi09g1308 533 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 424 431 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Glsi09g1308 533 FunFam Eukaryotic translation initiation factor 5A 460 532 - -
Glsi09g1308 533 SUPERFAMILY WD40 repeat-like 14 296 IPR036322 GO:0005515
Glsi09g1308 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Glsi09g1308 533 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 459 528 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Glsi09g1308 533 SUPERFAMILY Translation proteins SH3-like domain 389 467 IPR008991 -
Glsi09g1308 533 FunFam Eukaryotic translation initiation factor 5A 375 459 - -
Glsi09g1308 533 NCBIfam translation initiation factor IF-5A 392 527 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Glsi09g1308 533 Gene3D - 375 459 IPR014722 -
Glsi09g1308 533 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Glsi09g1308 533 FunFam Mitotic checkpoint protein BUB3.3 6 323 - -
Glsi09g1308 533 SUPERFAMILY Nucleic acid-binding proteins 460 530 IPR012340 -
Glsi09g1308 533 SMART eIF_5a_2 459 528 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Glsi09g1308 533 Gene3D - 460 532 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1308 Glsi-ChrGlsi09 9598433 9610381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1308 375 533 Eukaryotic Initiation Factors Gene Family AT1G13950 88.679 4.54e-98 292