Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1301 ATGGAAGAGACAGACGAGTCCAATGCTAACAAGAAATTCACAGCTCAAAGACGGAGCTTCAGGGTGGGGGCTAACTCCCACGAGCATCATCACTCTCAGCATCATCAGCTGTTACAATATTCAAGTCAGTTTGGGTTCTGCAACCAGAACAAGTTTCAGAGGTACTGCCCGGCTCTTCTTCCTCTACCTTCTCTTATACCTCTGCAACTAGCTTTGACGCCAACGTTCCCTCAAAACCAGAGCATCAAATCGAAAACCCATTTGCAGAAATATCCATGCAAGCTCAATAATTCTCCCTTAGCTGCCTCCTCAGATAACAAGGTCTCAGAAGCCACAGTTCCTTCTGCTCAGAAGGGGCTTCAACTGCAAACTAAGGCATCCCTTAAAGAAGATTATGGGAAGAAACTGATACCTGCAAGGAAACCGCAGGCATTAATTGCTGCGAGGAGACCAGACTCTGGTGGCAAAGAAGGTTCTGTTATCTCTCTCCTTGCCAACCACTTTCTTGTGCAATTTGATTCAACACAAAAAATATACCATTACAATGTTGAAATTACTCCTAATCCGTCCAAGGAAGTTGCCCGTGAAATCAAACAGAAATTGGTTGATAACAATTCTGTGGGGTTTTCGGGTGTTATGCCGGCATATGATGGGCGAAAGAATCTTTATAGTCCAGTTGAATTTCAAAATGACAAGCTTGAGTTCTACTTAAGTCTCCCAATCCCCTCTGGCAAGTTGAAATCGCCTTATGAAGAAATAAATGACTTGAAGGAAAAGCGTGAACAGCTTAAACTGTTCCGGATAAATATCAAACTAGTTTCTAAGATTAATGGGAAGGAGTTGACTAACTACATGAGCAAAGAGGAGGATGACTGGGTTCCACTTCCACAGGATTATCTTCATGCTTTGGATGTAGTTTTGAGGGAGAACCCAACAGAGAAGTGTGTACCTGTTGGGAGGTCATTCTATTCAAGTTCAATGGGAAAAACCAGAGAGATTGGGGGAGGAGCTGTTGGATTCAGAGGGTTCTTTCAGAGTCTCAGGCCAACCCAACAAGGTCTTGCTCTCAATGTTGATTTCTCTGTAACTGCTTTCCATGAGAGCATAGGAGTAATTACATACTTGCAGAAGCGCCTTGAGTTTCTTAGAGATCTTTCTCAAAGAAAGACAACAAGTTTGACTGGCGAAGAAAGGAAGGAAGTGGAGAAGACATTGAAGAACATCAGGATCTTTGTTCGCCATAGAGAAACTGTGCAGAGATACCGTGTCTATGGCTTAACTGAAGAAGTTACTGAAAATCTATGGTTTGCTGACAGGGATGGAAAGAATCTAAGGCTTGTGAGTTACTTTAAAGATCACTATAACTATGACATTCAATTCAGAAAGTTGCCATGCTTGCAAATTAGTAGGAGCAAACCATGTTATCTCCCTATGGAGCTTTGTGTCATCTGTGAAGGTCAGAAATTCCTTGGCAAGCTGTCTGATGATCAGACGGCTAAGATACTCAAGATGGGCTGCCAAAGACCAAGAGAACGAAAAGCCATCATTGAAGGAGTCATGAGAGGGCCTGTGGGGCCTACCAGTGGCAACCAGCAAAGAGAGTTCAAACTCAAAGTGTCGAGAGAAATGACACAGCTGACTGGGAGAATTCTTCATCCTCCCAAGCTAAAGCTTGGAGATGGAGGTCATGTGAGGAACCTAACTCCTTTGCGTCATGACCGCCAGTGGAACCTTCTGGATGGCCATGTCTTTGAAGGAACTAAAATTGAAAGGTGGGCACTAATAAGTTTTGGTGGTACACCTGAGCAGAAGTCTAATATCCCCAGATTCATAAATCAGCTGTCTCAAAGGTGTGAACAATTGGGCATTTTTCTTAGCAAAAACACAATTATCAGTCCTCAGTTTGAATCAAGCCAGGTGCTTAACCATGCTAACCTTTTGGAATCTAAGCTCAAGAAGATTCAGAGAACTGCCTTTAACAATCTCCAGCTGCTTATTTGTATTATGGAGAAAAAACACAAAGGGTATGCAGATTTGAAACGAATTGCTGAGACAAGTGTTGGGGTTGTAAGCCAATGCTGCTTGTATCCAAATATCATCAAGTTAAGTTCACAATTTTTGGCTAATTTGGCCTTAAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCCCTTTACAATTCACTGCCTTCTCAAATACCACGTCTATTTCAGATAGATGAGCCAGCGATATTTATGGGTGCTGATGTGACACATCCTCATCCGCTTGATGATTTCAATCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAATAAATATATTTCAAGAATAAGGTCTCAAACACATCGACAAGAGATCATCCAAGATCTTGGTGCAATGGTAGGGGAATTGCTTGATGATTTTGTTCAGGAAGTAAAGAAACTCCCTGGGAGAATAATCTTCTTCAGAGATGGGGTTAGTGAAACCCAGTTTTATAAAGTGCTACAAGAAGAACTGCAATCCATCAAAGGGGCATGTTCCAGATTTCCTGGTTATAAACCTTCCATTACTTTTGTAGTAGTACAGAAGAGGCATCACACAAGGCTTTTTCCCTTTGAAACCGACCAGCCTTCCACTCAAAATTATTCTCTGTATGAGAATATTCCTCCAGGAACTGTGGTTGACTCTGTGATTACTCATCCGAGGGAATTTGATTTCTATCTCTGCAGCCACTGGGGTGTGAAAGGAACAAGCAGACCAGCTCATTACCATGTCTTGTGGGATGAAAACCAGTTCACTTCTGATGAACTCCAGAAGCTGGTTTACAATTTATGCTTCACTTTTGTGAGGTGCACCAAGCCAATTTCTTTAGTTCCACCTGCTTATTATGCACATTTAGCTGCATATAGAGGCAGACTCTACCTAGAGCGATCAGAATACTCAGGTTTAAACAGAATCGCGTCTACATTATCTAGAGCTGCCCCTCCAAAGACAGCACCTCTACCAAGACTCAGCGAAAACATCAAGAAGCTCATGTTCTATTGCTAG 3042 0.4241 MEETDESNANKKFTAQRRSFRVGANSHEHHHSQHHQLLQYSSQFGFCNQNKFQRYCPALLPLPSLIPLQLALTPTFPQNQSIKSKTHLQKYPCKLNNSPLAASSDNKVSEATVPSAQKGLQLQTKASLKEDYGKKLIPARKPQALIAARRPDSGGKEGSVISLLANHFLVQFDSTQKIYHYNVEITPNPSKEVAREIKQKLVDNNSVGFSGVMPAYDGRKNLYSPVEFQNDKLEFYLSLPIPSGKLKSPYEEINDLKEKREQLKLFRINIKLVSKINGKELTNYMSKEEDDWVPLPQDYLHALDVVLRENPTEKCVPVGRSFYSSSMGKTREIGGGAVGFRGFFQSLRPTQQGLALNVDFSVTAFHESIGVITYLQKRLEFLRDLSQRKTTSLTGEERKEVEKTLKNIRIFVRHRETVQRYRVYGLTEEVTENLWFADRDGKNLRLVSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPRERKAIIEGVMRGPVGPTSGNQQREFKLKVSREMTQLTGRILHPPKLKLGDGGHVRNLTPLRHDRQWNLLDGHVFEGTKIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLSKNTIISPQFESSQVLNHANLLESKLKKIQRTAFNNLQLLICIMEKKHKGYADLKRIAETSVGVVSQCCLYPNIIKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFQIDEPAIFMGADVTHPHPLDDFNPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFVQEVKKLPGRIIFFRDGVSETQFYKVLQEELQSIKGACSRFPGYKPSITFVVVQKRHHTRLFPFETDQPSTQNYSLYENIPPGTVVDSVITHPREFDFYLCSHWGVKGTSRPAHYHVLWDENQFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSEYSGLNRIASTLSRAAPPKTAPLPRLSENIKKLMFYC 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1301 1013 SUPERFAMILY PAZ domain 363 521 IPR036085 GO:0005515
Glsi09g1301 1013 ProSiteProfiles Piwi domain profile. 664 974 IPR003165 GO:0003676
Glsi09g1301 1013 Pfam Argonaute linker 1 domain 317 366 IPR014811 -
Glsi09g1301 1013 CDD PAZ_argonaute_like 379 484 - -
Glsi09g1301 1013 Gene3D - 550 726 - -
Glsi09g1301 1013 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 142 975 - -
Glsi09g1301 1013 CDD Piwi_ago-like 533 973 IPR045246 -
Glsi09g1301 1013 Pfam N-terminal domain of argonaute 161 307 IPR032474 -
Glsi09g1301 1013 Gene3D paz domain 362 489 - -
Glsi09g1301 1013 SMART PAZ_2_a_3 376 516 IPR003100 GO:0005515
Glsi09g1301 1013 FunFam Protein argonaute 7 363 489 - -
Glsi09g1301 1013 SUPERFAMILY Ribonuclease H-like 650 974 IPR012337 -
Glsi09g1301 1013 ProSiteProfiles PAZ domain profile. 376 485 IPR003100 GO:0005515
Glsi09g1301 1013 Gene3D - 736 1013 IPR036397 GO:0003676
Glsi09g1301 1013 Pfam Piwi domain 665 971 IPR003165 GO:0003676
Glsi09g1301 1013 FunFam Argonaute 10 550 726 - -
Glsi09g1301 1013 SMART Piwi_a_2 664 974 IPR003165 GO:0003676
Glsi09g1301 1013 SMART DUF1785_2 316 368 IPR014811 -
Glsi09g1301 1013 FunFam protein argonaute 10-like 732 1013 - -
Glsi09g1301 1013 Pfam PAZ domain 379 501 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1301 Glsi-ChrGlsi09 9543722 9547561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1301 155 1013 Eukaryotic Initiation Factors Gene Family AT1G48410 41.731 0.0 639