Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1296 ATGGCTGCTGGGTGCTTTGCTTTATCCTCAAGCTCTGCTTTTCTTTCACCTTCTATATCGCATAATAGGTGCTTCTCCTTCCTAGCCAAAGGGTCACTGCTTCACCTCAAGAGGCCTCTCTCAGCTAACTCTCTCGCTTCTTTAGAACCAGACACAACGTTGTCCCCTGCGGTTCATACCTTCTGGCAGTGGCTATGGGACGAAGGAGTTGTCTCCGCCAAGACCCAAGTGAAACCTGGCATCGTGCCAGAAGGACTAGGTCTTGTTGCCCAGAGAGACATTTCCAGAAACGAGGTCGTTTTACAGGTGCCCAAGAGGCTGTGGATAAACCCAGATGCAGTGGCAGCTTCAGAAATTGGGAACGTGTGTAGTGGGTTGAAGCCTTGGGTGTCTGTTGCTCTGTTTTTGATAAGAGAGAGATCAAGGGATGAGTCCCTGTGGAAGCATTATTTCAGTATTCTCCCCGAGGTCACCAATTCCACTATATATTGGTGGGTTTCATTTGGTTTGATATACCTACTTGGTGGGAATTTTCTTTTTGTGTCAGAGGAGGAGCTATTTGAGCTTCAAGGTACTCAACTTCTGAATACAACATTGGGTGTGAAAGAATATGTGCAGAATGAATTTCTGAAATTGGAAGAAGAAATTATACTCCCTAATAAGCATCTTTTTCCTTCTCCTGTAACATTAAATGACTTCTTTTGGGCATTTGGAATTCTCAGATCAAGGGCATTCTCTGGCCTCCGCAATGAAAATCTAGTTGTAATTCCACTGGCAGACTTGATAAACCATAGTGCCAGGGTAACCACAGAAGATCATGCTTATGAAATTAAAGGCGCAGCAGGCCTTTTCTCTTGGGATTACCTATTTTCTTTGAGGAGCCCCCTTTCTGTCAAGGCTGGAGACCAGATATATATCCAATACGATTTGAAGAAAAGCAATGCTGAGTTGGCCCTGGACTACGGTTTCATTGAACCAAATGCAGATAGGAATGCATATACCCTAACACTAGGGATATCTGAGTCAGACCCATTTTTTAGTGATAAACTTGACATTGCAGAGTCCAACGGCTTTGGTGAGACTGCATACTTCGACATTTTCTTGGACCGTCCACTGCCACCCGGATTGCTTCCATACCTCCGGCTGGGAGCATTAGGTGGTACTGATGCTTTCCTGTTAGAATCTATATTCAGAAACTCCATTTGGGGCCATCTTCAGTTGCCCATTAGCCGTGGCAATGAGGAGCTCGTATGCCAGGTGGTTCGAGACAACTGCAAATCCTCCCTTGCTGGTTATCATACAACTCTGGAAGAGGATGAGAAGTTAAAAGAAGCAGATATAGATCCAAGACTCGCAATTGCAGTGGGAGTAAGAGAAGGGGAGAAGAAGGTCCTGCAGCAAATAGATGGGATCTTCAGCGAGAAAGAATTGGAATTGGATCAGTTATACTATTATCAAGAAAGGAGGCTCCAGGAGTCTGGTCTCTGCGGAGAAAATAGTGACGTTTTAGGGGACCTCAGAAAATTCATGTAA 1533 0.4488 MAAGCFALSSSSAFLSPSISHNRCFSFLAKGSLLHLKRPLSANSLASLEPDTTLSPAVHTFWQWLWDEGVVSAKTQVKPGIVPEGLGLVAQRDISRNEVVLQVPKRLWINPDAVAASEIGNVCSGLKPWVSVALFLIRERSRDESLWKHYFSILPEVTNSTIYWWVSFGLIYLLGGNFLFVSEEELFELQGTQLLNTTLGVKEYVQNEFLKLEEEIILPNKHLFPSPVTLNDFFWAFGILRSRAFSGLRNENLVVIPLADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSVKAGDQIYIQYDLKKSNAELALDYGFIEPNADRNAYTLTLGISESDPFFSDKLDIAESNGFGETAYFDIFLDRPLPPGLLPYLRLGALGGTDAFLLESIFRNSIWGHLQLPISRGNEELVCQVVRDNCKSSLAGYHTTLEEDEKLKEADIDPRLAIAVGVREGEKKVLQQIDGIFSEKELELDQLYYYQERRLQESGLCGENSDVLGDLRKFM 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1296 510 Pfam SET domain 85 308 IPR001214 GO:0005515
Glsi09g1296 510 SMART set_7 73 315 IPR001214 GO:0005515
Glsi09g1296 510 PIRSF RMT_SET 1 509 IPR011192 GO:0009507|GO:0030785
Glsi09g1296 510 Pfam Rubisco LSMT substrate-binding 341 465 IPR015353 -
Glsi09g1296 510 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 332 503 IPR036464 -
Glsi09g1296 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 56 465 - -
Glsi09g1296 510 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 325 489 - -
Glsi09g1296 510 CDD SET_RBCMT 77 324 IPR044431 GO:0016279|GO:0018022
Glsi09g1296 510 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 508 IPR011192 GO:0009507|GO:0030785
Glsi09g1296 510 Gene3D - 325 489 IPR036464 -
Glsi09g1296 510 Gene3D set domain protein methyltransferase, domain 1 54 324 - -
Glsi09g1296 510 ProSiteProfiles SET domain profile. 68 309 IPR001214 GO:0005515
Glsi09g1296 510 SUPERFAMILY SET domain 55 329 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1296 Glsi-ChrGlsi09 9504538 9508025 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi09g1296 SET 1.6e-06 No_clan