Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1288 ATGGTTAGGTCATCATGCTGTGAGAAGGTGGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCAAAAGCTCATGGCCTACATTGAAGAACATGGCCATGGAAGCTGGCGTGCATTGCCTGCCAAAGCTGGGCTTCAAAGATGTGGGAAAAGTTGCAGACTGAGGTGGACTAATTACCTCAGACCAGATATCAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCTCTTCTGGGAAACAGGTCAGCCAAGTTTTCTATTCTTGCCTGGGGTTTATATGGAATATAA 309 0.4628 MVRSSCCEKVGLKKGPWTPEEDQKLMAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRSAKFSILAWGLYGI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1288 102 SMART sant 13 63 IPR001005 -
Glsi09g1288 102 Gene3D - 13 66 - -
Glsi09g1288 102 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi09g1288 102 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi09g1288 102 CDD SANT 16 61 IPR001005 -
Glsi09g1288 102 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Glsi09g1288 102 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 89 - -
Glsi09g1288 102 FunFam MYB-related transcription factor 13 66 - -
Glsi09g1288 102 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1288 Glsi-ChrGlsi09 9463393 9463787 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1288 1 88 MYB Transcription Factor Family AT5G15310 89.773 1.21e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi09g1288 Myb_DNA-binding 3.7e-16 CL0123