Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1265 ATGAGTCTGCTTCAGCTGTCATCACCCATGTGCAGAGGTGCACTGACCTCTCTTTTCTCTGTACTTTGGCACTGTCATGAACATTGTCACTTGAAAGTAACTGGCTCTATCGCCCTCTTCCTTCCCTCTCAACCCCTACCCAAGGTCTATAAATTTAGCCCTATCCCCCTTCCTTTTTCTTCACTCATCTGCCGCACATTGCTTCAGTCTAGTTCCTCGTGTGACGCTTCAACATCAAAGAAAATGGCTCTCATTGGGTTGCTCTTCATGGGCTATCTCACCATGCTCTCCTCTGCTCATGGCTATGGCGGAGGAGGGTGGATCAATGCCCATGCTACCTTCTACGGAGGGGGTGATGCATCGGGAACAATGGGAGGGGCTTGTGGGTATGGGAACTTGTACAGCCAGGGGTATGGAACCAACACTGCTGCTCTGAGCACAGCTCTGTTTAACAATGGGTTGAGCTGTGGGTCTTGCTATGAGATTCGGTGCGTGAATGACCGAAGGTGGTGCCTGCCCGGCTCCATTATGGTCACAGCCACCAACTTCTGCCCACCAAACAACGCCTTGCCCAACAATGCAGGGGGCTGGTGTAACCCTCCTCAACACCATTTTGATCTCTCTCAGCCTGTCTTCCTCCGCATTGCCCAATACAGAGCTGGAATCGTCCCCGTGTCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGGATCAGGTTCACCATCAATGGCCATTCCTACTTCAACCTAGTCCTCATCACAAACGTCGGTGGTGCTGGAGATGTGCATGCTGCGGCCATCAAAGGGTCCAGAACTGGGTGGATGCCGATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAATTATCTCAATGGCCAATCCCTGTCCTTCAAGGTCACCACCAGTGATGGCCGCACTGTGGTCTCCTACAATGTTGCCCCGGCTGGCTGGTCCTTTGGCCAAACCTTCGCCGGTGCTCAATTTCGCTAG 993 0.5307 MSLLQLSSPMCRGALTSLFSVLWHCHEHCHLKVTGSIALFLPSQPLPKVYKFSPIPLPFSSLICRTLLQSSSSCDASTSKKMALIGLLFMGYLTMLSSAHGYGGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDRRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAAAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTFAGAQFR 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1265 330 PRINTS Expansin signature 176 186 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 195 212 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 236 248 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 212 225 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 137 151 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 248 269 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 312 328 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 164 175 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin signature 283 304 IPR002963 GO:0009664
Glsi09g1265 330 SUPERFAMILY Barwin-like endoglucanases 106 255 IPR036908 -
Glsi09g1265 330 FunFam Expansin 96 233 - -
Glsi09g1265 330 CDD DPBB_EXPA_N 106 232 - -
Glsi09g1265 330 Pfam Expansin C-terminal domain 238 315 IPR007117 -
Glsi09g1265 330 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 125 237 IPR007112 -
Glsi09g1265 330 Pfam Lytic transglycolase 142 227 IPR009009 -
Glsi09g1265 330 Gene3D - 94 233 IPR036908 -
Glsi09g1265 330 SMART dpbb_1 142 227 IPR007112 -
Glsi09g1265 330 FunFam Expansin 237 329 - -
Glsi09g1265 330 Gene3D - 237 329 IPR036749 -
Glsi09g1265 330 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 247 326 IPR007117 -
Glsi09g1265 330 SUPERFAMILY PHL pollen allergen 234 325 IPR036749 -
Glsi09g1265 330 PANTHER EXPANSIN-A15 92 329 IPR002963 GO:0009664
Glsi09g1265 330 PRINTS Expansin/Lol pI family signature 274 288 IPR007118 GO:0005576
Glsi09g1265 330 PRINTS Expansin/Lol pI family signature 146 164 IPR007118 GO:0005576
Glsi09g1265 330 PRINTS Expansin/Lol pI family signature 124 142 IPR007118 GO:0005576
Glsi09g1265 330 PRINTS Expansin/Lol pI family signature 106 121 IPR007118 GO:0005576
Glsi09g1265 330 PRINTS Expansin/Lol pI family signature 220 236 IPR007118 GO:0005576
Glsi09g1265 330 PRINTS Expansin/Lol pI family signature 312 326 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1265 Glsi-ChrGlsi09 9026492 9029661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1265 81 330 Expansin Gene Family AT2G03090 81.200 9.40e-153 427