Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1264 ATGTTAAAGATGGCTGGATTGAAGTTGCTTGTAATTGAACAGCTGGGGGTAATTCAAGGCGTTGTGGTTATAATTTGCAGGATGGGCAGGGTAAAGCTTAAGATAAGGAGGCTGGAGAACACCAATGGCCGTCAAGCAACCTATGCTAAAAGGAGGAATGGAATCATGAAAAAGGCTTCTGAGTTATCTATATTGTGCGATATAGATATTATACTTCTCATGTTCTCACCAACTGGGAAGCCGGCATTTTGCAGAGGGAGGCGCAGTAACATAGAGGATGTTATAGCAAAGTTTGCTCAACTAACTCCACACGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACGTTTAAGAAGTTGGACCATGATGTAAATATACAAGAATTTCTGGGTACAAGCCATTGGACCGATCCTGACAAAATCAACAGTGTGGAACAATTGGAAAATATGGAAAATTATCTCAGGGAGTCACTTAATCAAATTCGAACACGTAAGGAAGGTATGCAAAAACAACAACAACTTGTGTCATTGCAATGCACTAATCAGTTCAATGAGATGCATATTCCCTTCAGAATGAATGTTGAGCAACATCTCCAACCTCTATCGTGGACTGCCAATAGCAACAGCCAACGTATGGTTTTACCTGAGGAGTCAAACTTACTTCTCCACAAAGATGTAGAGTGCTCTGCGAGCTCCTCGTTTGGGAGTTATGCTAGTTATCTTGGCTCAAATACAAAAACAGATATGTCTAATTCTGGGCAAGAAAACGGTGTCCTCAGTGATTTGACAAGTACTGCTCCTCTAAGACTACAATTGGGCGGGCAGTTTCCATACCTGCCATACAATTTCAATTTATTGAATGACATGAAGTTCCAGCCACCTGCAGAGATGAATCCTCATGAAAACCCCATAGATTATCATCCTAACATAAGCTTTGAAGCCCCTAGACATGTTTATGACACAAACCACCATGGATGGGCTTTTTCCGCATCAGGGCCTTGCGCTGTTGCTACCATGTTTGATGAGCATTTGTATGCCCAGGCAAGTTTCGCTGAAGTGAACTTTGGCTTCACATAG 1089 0.4197 MLKMAGLKLLVIEQLGVIQGVVVIICRMGRVKLKIRRLENTNGRQATYAKRRNGIMKKASELSILCDIDIILLMFSPTGKPAFCRGRRSNIEDVIAKFAQLTPHERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSHWTDPDKINSVEQLENMENYLRESLNQIRTRKEGMQKQQQLVSLQCTNQFNEMHIPFRMNVEQHLQPLSWTANSNSQRMVLPEESNLLLHKDVECSASSSFGSYASYLGSNTKTDMSNSGQENGVLSDLTSTAPLRLQLGGQFPYLPYNFNLLNDMKFQPPAEMNPHENPIDYHPNISFEAPRHVYDTNHHGWAFSASGPCAVATMFDEHLYAQASFAEVNFGFT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1264 362 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Glsi09g1264 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 208 - -
Glsi09g1264 362 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Glsi09g1264 362 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Glsi09g1264 362 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Glsi09g1264 362 Coils Coil 104 124 - -
Glsi09g1264 362 ProSiteProfiles MADS-box domain profile. 28 80 IPR002100 GO:0003677|GO:0046983
Glsi09g1264 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 81 IPR002100 GO:0003677|GO:0046983
Glsi09g1264 362 FunFam Agamous-like MADS-box protein AGL30 41 123 - -
Glsi09g1264 362 CDD MADS 29 81 - -
Glsi09g1264 362 Gene3D - 41 124 IPR036879 GO:0003677|GO:0046983
Glsi09g1264 362 SUPERFAMILY SRF-like 29 122 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1264 Glsi-ChrGlsi09 9019216 9022868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1264 28 351 Type I MADS-box Gene Family AT2G03060 44.709 5.58e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi09g1264 SRF-TF 4.2e-19 No_clan