Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1261 ATGAAGGAAGCAGCATGGCCAACATGTGCTATATATTCTTCACAACGAGACCCAATAAATGGCCTCAGCTCTGACCCTTCTTCCTCTACTTGTCCTTGTTCTTCAATGGGAATGGTCTATGCAGACATGCGCTCTCTATCTCTTTGCTCAGACCATGCTCTAGTTTCAGCTATTTCTTCATCTCAAGAGACTTATAATGCTTCTGCCTGCAAGAGCTCTGAAATGGGAAATGGGGGTAGTAGTACAAGCTGGAGTTTTCCATTTAAGAGGGAATGCCTTGCCAGAAACTTGGAGGAAGATGTTAATATTGTGCAGGGTAAAGGTTCTGATTGCAGTGATGAGAAAATAATAGATCATGAAGAAGAAAACCCTAATGAGAATTCTGTCAGTGGTAGCAAAGAGGCAGATTCTGGGCAGTCCAAGCTTTGTGCAAGAGGGCATTGGAGGCCTGCTGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGACCTCAGAACTGGAACCTCATAGCCGAAAAGTTGGAAGGAAGATCAGGCAAGAGCTGTAGGCTGAGATGGTTCAACCAGTTGGACCCAAGGATCAATAGAAGAGCTTTTACTGAAGAAGAAGAAGAAAGGCTAATGCAGGCCCATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCCGGAAGAACAGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCTAGGAAGTACAGAGAACAATCCAGTGCTTACAGGAGAAGAAGGCTCAGCCAATCTGTTTATCACAGAAGAATGGAGGAAAATCCAAGCTCTGTCTGCAGAGACACTGAATCCCCACCCTATTGTCTCAATCTCCCCAACGGAGGAGGAGGACTCAACGACAATAATATCAATATGCCTATTTTCCCATATGCTACCTTCCATGGAGCTGCATCTGGTGGTGGGGTTGAGTATGGCTCAAATGGCTCGCCCCACATGACTGGTGGGAGAGAAGCAATCTCAAGCAGCATCAAGCAGGCCCCTCCTCCTACTTCCTTGTGTGCTCAACAAACACCATTTGATTTCTTCTCTGGTGGTAGAAGCAATGACATGGTGGTGGTTGGGTCTTTAGGCCAGAGCAGATACAGAGAAACGCCAAGTGATGAATGTCGTCATCTTCATCATCTACCTGGCTTCTACCTCCATTTTCCCCAATATTTGATGCCAACGCAACAGTCACACAACCACAATCACAATTTTTACAGTGTCTCAAATTCCGTAGCAGCATCAAGATCACTCCCCCACGTTTCAACAGCTGAACCATCATCATCTATTGGAGAGAACAGAGATGGAGTACTGAGTCACCCCCCTGATGCCATTTCACCTCCATTTATTGACTTTCTTGGGGTTGGAGCCATATGA 1407 0.4549 MKEAAWPTCAIYSSQRDPINGLSSDPSSSTCPCSSMGMVYADMRSLSLCSDHALVSAISSSQETYNASACKSSEMGNGGSSTSWSFPFKRECLARNLEEDVNIVQGKGSDCSDEKIIDHEEENPNENSVSGSKEADSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYHRRMEENPSSVCRDTESPPYCLNLPNGGGGLNDNNINMPIFPYATFHGAASGGGVEYGSNGSPHMTGGREAISSSIKQAPPPTSLCAQQTPFDFFSGGRSNDMVVVGSLGQSRYRETPSDECRHLHHLPGFYLHFPQYLMPTQQSHNHNHNFYSVSNSVAASRSLPHVSTAEPSSSIGENRDGVLSHPPDAISPPFIDFLGVGAI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1261 468 SMART sant 144 193 IPR001005 -
Glsi09g1261 468 SMART sant 196 244 IPR001005 -
Glsi09g1261 468 Pfam Myb-like DNA-binding domain 197 240 IPR001005 -
Glsi09g1261 468 Pfam Myb-like DNA-binding domain 145 191 IPR001005 -
Glsi09g1261 468 SUPERFAMILY Homeodomain-like 145 238 IPR009057 -
Glsi09g1261 468 MobiDBLite consensus disorder prediction 428 452 - -
Glsi09g1261 468 Gene3D - 198 270 - -
Glsi09g1261 468 MobiDBLite consensus disorder prediction 428 444 - -
Glsi09g1261 468 CDD SANT 148 189 IPR001005 -
Glsi09g1261 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 191 IPR017930 -
Glsi09g1261 468 FunFam MYB transcription factor 198 269 - -
Glsi09g1261 468 CDD SANT 199 239 IPR001005 -
Glsi09g1261 468 Gene3D - 145 196 - -
Glsi09g1261 468 ProSiteProfiles Myb-like domain profile. 192 242 IPR001005 -
Glsi09g1261 468 PANTHER MYB PROTEIN-RELATED 132 332 - -
Glsi09g1261 468 FunFam MYB transcription factor 145 196 - -
Glsi09g1261 468 ProSiteProfiles Myb-like domain profile. 145 191 IPR001005 -
Glsi09g1261 468 MobiDBLite consensus disorder prediction 120 142 - -
Glsi09g1261 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 192 246 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1261 Glsi-ChrGlsi09 9003009 9004743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1261 120 262 MYB Transcription Factor Family AT1G69560 74.834 2.50e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g1261 Myb_DNA-binding 2.2e-14 CL0123