Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1260 ATGTCGCAGGTTAAAGACCCGGCGATAAAGTTATTTGGGAGGACGATTTCTTTGCCCCTCAACCGCCAAGTCCTCCCCAAAAACGAATCTCCTGTTCCGGCACCTGTTTTTGATGATTCCTCTGATCAGAGTCGTCCTTCATCTTCGTCTTCTCCGCGTGAAGTCAGCTCTGGAAGAGAATATCAACCAGAAGGGGATAAGGAATCGTCAAAGAAAGAACTCACCTCAGTACAGGATGATGATGTTTCACATCATAGCACAGAGGATTTAAAATCTCCCACAGCATCTTCAGGCATTTTTGAGAGCCCCAAGACTCCCTCAGATGAAAGAGAGACTTCTTTACTGAAATCTTCTAAACATGGAGAACAAAGTGAGACAAGTCTTTTAAAAGAAAAAACTCTGAAGAAACCTGACAAGATACTTCCATGCCCGCGATGCAATAGCATGGAAACCAAATTTTGTTATTATAACAATTACAATGTCAACCAGCCCCGTCATTTCTGCAAGAACTGTCAGAGATATTGGACTGCTGGAGGAACCATGAGAAATGTGCCTGTAGGTGCTGGTCGTCGCAAGAACAAAAACTCTTCTATCTCACATTATCGTCACATAATGGTTCCAAAGCCACTGCAAATGGCTGAAGACAACGCCGCCAATGGATTACTTGTGGGAAATGGAGCAGCTGTCTTGACCTTTGGCTCAGATTCTCCTCTTTGTGATTCCATGGCTTCTGCATTGAACCTTGCAGAGAAAACACAGAATGGTGTTTTAAATGGGTTACATTTACCTGAGCAGAATATCTTTGTTTCTTATGGTAGAGAAGATAAAGGGAGTCGTCACTCAGTTGGAGCTTCTGTTACATCTTCAACTATAACTTCACCAAAGAAGAAAGGCAACGCTGTGTTGCAAGAACCAACGGATAAAATGAATCAGGGTTTCCCTCCTCAATTGCCATGCTTCCCAGGTTCGCCCTGGCCGTATCCATGGAACTCAGCACAGTGGAGTTCTTCAGTGCCTCCTCCTGCATTCTGTCCGCCAGGCTATCCAATATCATTCTATCCCCCTCCTACATATTGGGGTTGTACTTTACCTACCTCCTGGAATATGCCATCCATGTCTACCCAATCTTCTGTTAACCAATCTGCCCCTAGCTCTGGCCCTAATTCACCTACATTGGGGAAACACTCCAGGGAAGGGAACATCCTCAGGCCAGCCAACTCACAGAATGAAAAGCTCGATATAGAGAGTAATAATTCAGAAAATAGTGTCCTGATCCCCAAGACTCTGAGAATTGATGATCCCAGTGAAGCAGCAAAGAGTTCCATATGGTCAGCACTAGGGATAAAGAATGAAAAGGCCAATTCTCTGAATGGAGGAGGCCTTTTCAAGGCATTTCCATCTAAGGGAGCTGACAAGAATCATGTGGTTGAACCATCGCTGGTGTTGCATGCCAACCCTGCAGCTCTAACACGGTCTCTTACGTTCCATGAGCAGACATGA 1500 0.4487 MSQVKDPAIKLFGRTISLPLNRQVLPKNESPVPAPVFDDSSDQSRPSSSSSPREVSSGREYQPEGDKESSKKELTSVQDDDVSHHSTEDLKSPTASSGIFESPKTPSDERETSLLKSSKHGEQSETSLLKEKTLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSISHYRHIMVPKPLQMAEDNAANGLLVGNGAAVLTFGSDSPLCDSMASALNLAEKTQNGVLNGLHLPEQNIFVSYGREDKGSRHSVGASVTSSTITSPKKKGNAVLQEPTDKMNQGFPPQLPCFPGSPWPYPWNSAQWSSSVPPPAFCPPGYPISFYPPPTYWGCTLPTSWNMPSMSTQSSVNQSAPSSGPNSPTLGKHSREGNILRPANSQNEKLDIESNNSENSVLIPKTLRIDDPSEAAKSSIWSALGIKNEKANSLNGGGLFKAFPSKGADKNHVVEPSLVLHANPAALTRSLTFHEQT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1260 499 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Glsi09g1260 499 MobiDBLite consensus disorder prediction 1 133 - -
Glsi09g1260 499 MobiDBLite consensus disorder prediction 104 133 - -
Glsi09g1260 499 MobiDBLite consensus disorder prediction 281 299 - -
Glsi09g1260 499 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Glsi09g1260 499 PANTHER CYCLIC DOF FACTOR 2 1 498 IPR045174 GO:0003700|GO:0006355
Glsi09g1260 499 MobiDBLite consensus disorder prediction 371 408 - -
Glsi09g1260 499 MobiDBLite consensus disorder prediction 40 57 - -
Glsi09g1260 499 MobiDBLite consensus disorder prediction 89 103 - -
Glsi09g1260 499 MobiDBLite consensus disorder prediction 59 88 - -
Glsi09g1260 499 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Glsi09g1260 499 MobiDBLite consensus disorder prediction 279 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1260 Glsi-ChrGlsi09 8994166 8997247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1260 4 497 C2C2-Dof Transcription Factor Family AT5G39660 42.004 1.12e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi09g1260 zf-Dof 4.5e-32 No_clan