Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1258 ATGGCTTCTCAACCCGAGGTCTCTGAGATTTCGTCTCTGTTTGAAAGGTTGGTAGGATACAGAGAGCTATCTATGTTTTTACCCTTCATCTTTGGCTTCTCAACCGCTTCTCCTGGAAGAGACAGTCAAGACCCAGATCAGGGAACTGAGATTTCCGAAGGTTCCCAGCGCGAAAGAGTCATCTTGATCAACCCCTTTACGCAAGGTATGTTTGTGATTAATGGTGCTTCGAGCCTGGAGGAGCTGTTTCATGAAATTGGTAGCAAGGGTGGGCCACCCCCGGCTTCCAAAGAATCCATAGATGCCCTGACGAGTGTTGAAATAGGGGAAGGTGAAGACGGGGAGTGTGTTATTTGCTTGGAGGAATGGGAGGTTGGTGGGGAGGCCAAAGAGATGCCTTGTAAGCATAAATTTCACCCCAATTGCATAGAGAAGTGGTTGGGGATTCATGGGTCTTGCCCCGTTTGCAGGTACCAGATGCCTGTTGACGAGAAAGACGTGGGGAAGAAGAGAGATGAAGAAGGGGGAGAGAGAAGGAGGGCTGACAGAGAAGTTTGGGTAACTTTCTCTATTAATAGAAATAGCAGTCGGGATCCAAATCAAGCTCCTTCAGGTGATTCCAGTGATTCTTCGTCAAGTCCAAGTGGTGATGCTGGGGTAGAGAGCTAG 669 0.4858 MASQPEVSEISSLFERLVGYRELSMFLPFIFGFSTASPGRDSQDPDQGTEISEGSQRERVILINPFTQGMFVINGASSLEELFHEIGSKGGPPPASKESIDALTSVEIGEGEDGECVICLEEWEVGGEAKEMPCKHKFHPNCIEKWLGIHGSCPVCRYQMPVDEKDVGKKRDEEGGERRRADREVWVTFSINRNSSRDPNQAPSGDSSDSSSSPSGDAGVES 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1258 222 SMART ring_2 116 156 IPR001841 -
Glsi09g1258 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 163 IPR013083 -
Glsi09g1258 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 161 - -
Glsi09g1258 222 MobiDBLite consensus disorder prediction 190 222 - -
Glsi09g1258 222 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Glsi09g1258 222 Pfam Ring finger domain 115 157 IPR001841 -
Glsi09g1258 222 FunFam E3 ubiquitin-protein ligase RNF181 83 163 - -
Glsi09g1258 222 SUPERFAMILY RING/U-box 102 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1258 Glsi-ChrGlsi09 8970738 8971406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1258 1 213 C3H Transcription Factor Family AT1G26800 47.248 4.72e-60 186