Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1248 ATGAGCGATCATTTGGTGTTGTATGTTGATCGTCTTGAACGGCCTGCGGCCGTTGAACCGGTGACACAGCCGGCTGAGGTCCAGTCTGAGCCATCACAGTCTGTGGATGTGGCTGGGCCATCTGGTTCTTCACCGCCGGTGGATGATGGCGCTAGGTCTGAGCATGGTGAGGGTTGTAATGAGGATGAGCCCCTGATCCAGGGGGCGGAGTGTCGCATTTGTCAGGAGGAGGACAGCGTTCAGAATTTAGAGACTCCTTGTGCATGCAGCGGCAGTCTGAAGTTTGCTCACAGAAAGTGCGTTCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGAATTATCAACCTGGTTATATTGCCCCACCACCTCGCCCTAATCCTGAAGAAACCACCATTGATATAGGTGGAGGATGGACGATCTCTGGCACACCTTTGGACTTGCGTGATCCTCGGCTCTTGGCGATTGCAGAGGCCGAACGCCAATTCATTGAAGCTGAATATGATGAATATGCTGCTTCCAATGCTAGTGGAGCTGCATTCTGTCGCTCAGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTGTCTGTTACAGATTCTGATTCTGATGATGATCCATCTACTTTCTTCTCTCTTTTCTTACTTCGAGCAGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAGAGGCTGCAGCATTGGCAGCCACGCAAGTGGCTTTTGTTTTACAATCGGGGCAGCGTAGGGGTCTGCAATTTGCGATAGCACCAGGACCCACAGTGAACACACAACAGGAACATTCTTAG 870 0.4977 MSDHLVLYVDRLERPAAVEPVTQPAEVQSEPSQSVDVAGPSGSSPPVDDGARSEHGEGCNEDEPLIQGAECRICQEEDSVQNLETPCACSGSLKFAHRKCVQHWCNEKGDITCEICHQNYQPGYIAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFIEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDSDSDDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVNTQQEHS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1248 289 MobiDBLite consensus disorder prediction 25 40 - -
Glsi09g1248 289 FunFam RING/FYVE/PHD zinc finger protein 59 127 - -
Glsi09g1248 289 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Glsi09g1248 289 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
Glsi09g1248 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 122 IPR013083 -
Glsi09g1248 289 SMART ringv_2 70 117 IPR011016 GO:0008270
Glsi09g1248 289 SUPERFAMILY RING/U-box 68 121 - -
Glsi09g1248 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Glsi09g1248 289 Pfam Protein of unknown function (DUF3675) 122 240 IPR022143 -
Glsi09g1248 289 Coils Coil 159 179 - -
Glsi09g1248 289 CDD RING_CH-C4HC3_MARCH 71 117 - -
Glsi09g1248 289 MobiDBLite consensus disorder prediction 17 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1248 Glsi-ChrGlsi09 8926266 8929106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1248 70 146 C3H Transcription Factor Family AT2G37950 35.955 1.51e-07 49.3