LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g1246	ATGGCGACCAAGAGTTCTGAGAATCCTACCGGAAATCTTGAGCTAGCATTATCCAAAGAGGAAGAGGATATCCTGCAGAGAAGTAACAAAAAAATCAAAGCTAATGTGGAGGAGGAGGGCAAGCTGGATGAAGTTATGGGGGAGGTTGTAGTTCCAATGACACCAACAAGCATAATGCCCGTAGATATAGTAGCCCCAAGGGAGGAAGTCGTTATGGAGGATCCTAAGAGAGGGGTACCTATGGTAGACGTGAGCAGTATTGGGAAGAGTAAGCAGAGCCAGGAGATTTACAATACCCAGGACTTTGGGAAAACTGGAGCCTCATACCGTGATAGACTCTTGGGGTTCAATGGCATTGCTAATAGCCGGGAAGAGTTAGGACCTCTTGCAAATCTGGCAACCGGATCTATCCAGGAAGACTTGAGGCATTTTTCTGTGGCTGAGATGACTACTTCATCAGGGCAATGGGACTGGAATGTTATGACAGACTTACTGCCTGGAAGAGCCCTCGATGCCCTTACAGCTATAATGCCACCGAATGAAGGAAGAGCAATTAGGCACGCCTTCATCTCAACTTGTCTAATCAATACTGAGAAAGGATCATTAACCCACGAGGACACACATTTCTATTTCTTGGATTCTAGCACAGCATGCATGATTGATCTAGCTAGGCAGACAGACATGGACTTGACCCCCACCAACACCCCCACCTTACATCCAGATACTCAAACCCCACCGCCCCCCCAACTCACCAACTCCTCCAAGTCTTTATCTTTGACTAACGGCTCACTCAAGCGCCACAACTCTCCCGTCCCACCGCCCCCGGTGGTTTCTTACAAGGAATGCCTCAAGAACCACGCCGCCAACATTGGTGGCCACGCGCTTGATGGCTGCGGCGAGTTCCTGCCTTCATCCACCTTCAATCCCAGTGATCCTCGCTCCCTAAAATGTGCCGCGTGTGGCTGCCACCGCAACTTCCACCGCCGTGACCCACAAGAATATTACTCCAACCCCAACTTCTTGAGCTGCTTCTACCCGCAGCCTGCGGCAGCTTTACCGCCGCCGCCGCCGCCGCTGCTACCGCACCGGGGATTAAGCCTGAGCACCAGCCCAAGCCTGAGCCCAAGTCCCAGCACTAGTCCAAGCCCGATATCAAGCCCCTCGCCTCCGCCAGTCTCACATTTCCTACCTTCCTACCACACATCGGCACCCCAGATGCTCTTAGCCCTTGGCAACGCCTATTCTGGACCATCTGATCATGAGCAGCATCGGAATTTCAATTCTCCAGCAATGAAGATGGAGAACCCAAGTGGGAAAAAGAGACACAGAACCAAATTCAGCCAAGAGCAGAAGGAGAAGATGTATGCGTTCTCTGAGAAATTGGGTTGGAGAATGCAGAGGGCGGATGATAGAATGGTTCAGGATTTTTGCAATGAAGTTGGTGTTTCCAGAGGGGTGTTCAAGGTTTGGATGCACAACAACAAGAACAGTTTCAGGAAAAGATCAGAAACGGGCAATGCTCAAACTGAGAAAATCAACGAGGATGATGACAATAGTGGTGGAGGTGGCTGCTTTAATAGTGATATTAACAATGCTTACAATGACAATCCCAGAAATGAAGATAGCAGTGTCAATCTTCAAGTTTCTGTAAATGGGTCGTCTTCTTAA	1668	0.4958	MATKSSENPTGNLELALSKEEEDILQRSNKKIKANVEEEGKLDEVMGEVVVPMTPTSIMPVDIVAPREEVVMEDPKRGVPMVDVSSIGKSKQSQEIYNTQDFGKTGASYRDRLLGFNGIANSREELGPLANLATGSIQEDLRHFSVAEMTTSSGQWDWNVMTDLLPGRALDALTAIMPPNEGRAIRHAFISTCLINTEKGSLTHEDTHFYFLDSSTACMIDLARQTDMDLTPTNTPTLHPDTQTPPPPQLTNSSKSLSLTNGSLKRHNSPVPPPPVVSYKECLKNHAANIGGHALDGCGEFLPSSTFNPSDPRSLKCAACGCHRNFHRRDPQEYYSNPNFLSCFYPQPAAALPPPPPPLLPHRGLSLSTSPSLSPSPSTSPSPISSPSPPPVSHFLPSYHTSAPQMLLALGNAYSGPSDHEQHRNFNSPAMKMENPSGKKRHRTKFSQEQKEKMYAFSEKLGWRMQRADDRMVQDFCNEVGVSRGVFKVWMHNNKNSFRKRSETGNAQTEKINEDDDNSGGGGCFNSDINNAYNDNPRNEDSSVNLQVSVNGSSS	555

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g1246	555	Pfam	ZF-HD protein dimerisation region	277	331	IPR006456	-
	Glsi09g1246	555	NCBIfam	ZF-HD homeobox protein Cys/His-rich dimerization domain	279	330	IPR006456	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	501	555	-	-
	Glsi09g1246	555	Gene3D	-	427	500	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	354	397	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	1	20	-	-
	Glsi09g1246	555	ProSiteProfiles	Zinc-finger ZF-HD dimerization-type profile.	279	330	IPR006456	-
	Glsi09g1246	555	PANTHER	ZINC-FINGER HOMEODOMAIN PROTEIN 2	255	497	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	435	450	-	-
	Glsi09g1246	555	NCBIfam	homeobox domain, ZF-HD class	439	496	IPR006455	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	248	267	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	376	394	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	411	450	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	229	276	-	-
	Glsi09g1246	555	FunFam	Zinc-finger homeodomain protein 2	426	500	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	418	432	-	-
	Glsi09g1246	555	SUPERFAMILY	Homeodomain-like	433	500	IPR009057	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	523	555	-	-
	Glsi09g1246	555	MobiDBLite	consensus disorder prediction	501	517	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g1246	Glsi-ChrGlsi09	8896556	8908429	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g1246	277	498	ZF-HD Transcription Factor Family	AT1G69600	50.442	1.30e-60	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	zf-HD	Glsi09g1246		ZF-HD_dimer	7.3e-28	No_clan