Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1223 ATGGCTGATTCTCAGAGAACGGGTCTTGGCGAGAGGAATATTGAACAGGCTATTACATCTCTTAAGAAAGGTGCATATCTGCTAAAGTATGGACGCAGAGGGAAGCCAAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTCCTGATATGGTACTCTGGCAAGGAAGAGAAACAACTAAAGCTCAGTACTGTTTCAAAAATAATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGACCTGAAAAGGAATATCAATCGTTTTCCCTTATATACAACGATAGGTCCTTGGATTTGATTTGTAAGGACAAGGACGAAGCTGAAATCTGGTTTGTCAGTCTTAAGGCATTAGTTACTCGAGGTAACAATCACAAGTGCAGATTTGAATCAAGATGTGAAAGTGTGTCTTCTGATAGTCCACAATCTCGTACACGAAGAAATTCTCCATCGATTGCACCATATGACCCAGGAGATACTGAAGGACTTTCTTTTGATAATAATTCACAAAATAGATTGGGAAAGGCTTTCTCTGAAATTATTTCATGTACCGCAGCTGGCAAGAGTTTCAACCAAGCTGAATCAATTGTGAATTCCTCTTTGTCCTCTGGGTCCGTGGATAACTCAAACAATCGAAATTCTGCATCTGAGCCATTTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGCCATAGTTCTTATCATGAAGATCTTGATGCTATTGGTGATGTTTTTATCTGGGGAGAAGGTATTGCTGATGGAATGCTTGGTGGTGGTTTGCATAGATGTGGAACCTTATCGAGCTCTGAGATGGATGCATTTCTCCCCAAGGCATTGGAATCAAAAGTAGTTCTAGATGTTCAAAGTATTACTTGTGGTTACAAACATGCTGCTCTAGTTACCAAGCAAGGAGAAATATATAGTTGGGGGGAGGAGTCAGGAGGTAGGCTTGGGCATGGTGTAGAAGTGGATGTTTCCCACCCTAAGCTCATTGACACTCTTAGTGGCATGAATATTGAATCAGTAGCATGTGGGGAATATCATACTTGTGCTGTCACATTTTCTGGGGATCTTTATACTTGGGGTGATGGTACTCACAATTCTGGTTTGCTTGGGCATGGAAATGAAGTCAGTCATTGGATTCCTAAGAGAGTAAGTGGTAGCATGGAGGGTGTACATGTATCCTATGTGTCTTGTGGACCTTGGCACACAGCTATTGTGACATCTTCTGGCCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGCCATGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAAACTTTTAAAGGGTTGAGAACAACCAGAGTTTCCTGTGGTGTTTGGCACACTGCTGCTGTTGTTGAGGTGGAAAATGAATCTGTGGAATCTTCTAGACACTCTCCTAGTAGAAAACTGTTCACCTGGGGTGATGGAGATAAAGGCCGACTTGGACATGGTGATAAGGAACCTAAATTAGTTCCTGAACGTGTAACTGCTTTGGATAAAGAAAATATTTGTCAAGTGGCTTGTGGTCACAATCTTACAATTGCTTTGACAACCTCAGGACATGTATATACAATGGGCAGTACTGCCTATGGACAACTTGGCAGTCCTGCAGCTGATGGAAAAGTCCCTATGCGGGTTAAAGGTGGAATTGGTGACAGCCTTATTGAAGACATTGCCTGTGGTTCGTACCATGTTGCAGTCCTGACTTCTAATGCAGAGGTTTACACCTGGGGAAAAGGTTTGAATGGGCAGTTAGGTCATGGAGACAATGATAACCGAAATACACCTACATTTGTTGAGTTTTTTAAAAATAAGCAAGTGCGGAGTGTTGTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCCTCATAAATGGGTATCAAGTGCTGACCATTCTGTGTGTTCTGGTTGTCACAATCCATTTGGATTCAGAAGAAAACGTCATAACTGTTACAACTGTGGACTTGTCTTTTGCAAAGCATGCAGCAGTAAAAAATCTACTAAAGCTTCCCTTGCTCCAAATGTCAACAAGCCATATCGTGTTTGCGATGATTGTTATTCTAAACTTAAGAAAGCCACAGAATCTGCTTCCTTGATGAAAACTTCTACTTTGAAAAGTGGAAGTATGCCTGACTCTTGGGCTGGTAAATTACAGGGAGCACTGTCAAGGCTTTCGTCTTTTAATTCTATTGTTCAAGCAGAAAGCAGGCACTCAAAGCTTCCAGAATCACATCATAGCCATGTTTTTCCAGCTTTGAATGGAAAACTACAGTTGGGAGGATTCACTCCTCCAAACACATCAAATTCTGTTGCTGGAGCATTAAAGAAGCCCCTTTCAGTTTCGGTGCCTGCTAGTAGTATGACTTCTGAAGCGACATCTCAAGGTTCAGCAAGGTCAAGCCCGCGCCAGTCTTGTGAAGATGTCCATGATGATTCAAAGCACAGAAACGACATTTTAAGTCGAGAAGTTATAAGTTTAAGGGCACAGGTTGAAGATCTCACTCGTAAATCCAAGCATCTTGAGGCTGAACTTGAGAGGACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGACGAAGCTGAGAAGTGTAAATCTGCCAAAGAGGTTATAAAGTCATTGACTGCTCAGTTGAAGGAAATGGTGCAAAGAGTGCCAGAAGGAGATAATGCCAACTCCAGTTCAGACTTCTCTGCTGAAATTACTACAAATGTTCTAAATCAGTCCTTAGATGAGAGCCATAAAACAAACACTACCACTTCCGAATCTGAGTCCGACAGCAGTGCAGCAAGTCGAATATTGCCTAACGTTTCCAAAGCACATGGTGGAAAAGCAGAGTGGGTGGTGCAAGATGAACCGGGTGTTTACATAAGTTTGTCCTCCTTGCCAGGTGGTGGTAATGAACTTAAACGTGTGCGCTTCAGTCGTAGACATTTTACAGAACAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGAGCCAAAGTATTGGAGCGGCACAACGTAGTTAATTCATAG 3051 0.4241 MADSQRTGLGERNIEQAITSLKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKEEKQLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVSLKALVTRGNNHKCRFESRCESVSSDSPQSRTRRNSPSIAPYDPGDTEGLSFDNNSQNRLGKAFSEIISCTAAGKSFNQAESIVNSSLSSGSVDNSNNRNSASEPFRVSLSSAVSSSSHSSYHEDLDAIGDVFIWGEGIADGMLGGGLHRCGTLSSSEMDAFLPKALESKVVLDVQSITCGYKHAALVTKQGEIYSWGEESGGRLGHGVEVDVSHPKLIDTLSGMNIESVACGEYHTCAVTFSGDLYTWGDGTHNSGLLGHGNEVSHWIPKRVSGSMEGVHVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGHGDHSSTNIPREVETFKGLRTTRVSCGVWHTAAVVEVENESVESSRHSPSRKLFTWGDGDKGRLGHGDKEPKLVPERVTALDKENICQVACGHNLTIALTTSGHVYTMGSTAYGQLGSPAADGKVPMRVKGGIGDSLIEDIACGSYHVAVLTSNAEVYTWGKGLNGQLGHGDNDNRNTPTFVEFFKNKQVRSVVCGSNFTAVVCPHKWVSSADHSVCSGCHNPFGFRRKRHNCYNCGLVFCKACSSKKSTKASLAPNVNKPYRVCDDCYSKLKKATESASLMKTSTLKSGSMPDSWAGKLQGALSRLSSFNSIVQAESRHSKLPESHHSHVFPALNGKLQLGGFTPPNTSNSVAGALKKPLSVSVPASSMTSEATSQGSARSSPRQSCEDVHDDSKHRNDILSREVISLRAQVEDLTRKSKHLEAELERTSKQLKEVTAVAADEAEKCKSAKEVIKSLTAQLKEMVQRVPEGDNANSSSDFSAEITTNVLNQSLDESHKTNTTTSESESDSSAASRILPNVSKAHGGKAEWVVQDEPGVYISLSSLPGGGNELKRVRFSRRHFTEQEAEKWWAENGAKVLERHNVVNS 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1223 1016 Gene3D - 13 129 IPR011993 -
Glsi09g1223 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 708 IPR013083 -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Glsi09g1223 1016 MobiDBLite consensus disorder prediction 138 169 - -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 582 IPR000408 -
Glsi09g1223 1016 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 639 701 IPR017455 -
Glsi09g1223 1016 MobiDBLite consensus disorder prediction 918 944 - -
Glsi09g1223 1016 PRINTS Chromosome condensation regulator RCC1 signature 578 599 IPR000408 -
Glsi09g1223 1016 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Glsi09g1223 1016 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Glsi09g1223 1016 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Glsi09g1223 1016 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Glsi09g1223 1016 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Glsi09g1223 1016 Pfam Transcription factor BRX N-terminal domain 871 898 IPR027988 -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Glsi09g1223 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Glsi09g1223 1016 CDD PH_PLC_plant-like 12 122 - -
Glsi09g1223 1016 Pfam FYVE zinc finger 635 701 IPR000306 GO:0046872
Glsi09g1223 1016 Pfam Transcription factor regulating root and shoot growth via Pin3 956 1011 IPR013591 -
Glsi09g1223 1016 Coils Coil 827 896 - -
Glsi09g1223 1016 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 467 - -
Glsi09g1223 1016 SUPERFAMILY RCC1/BLIP-II 242 636 IPR009091 -
Glsi09g1223 1016 Gene3D - 476 647 IPR009091 -
Glsi09g1223 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Glsi09g1223 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Glsi09g1223 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 413 462 IPR000408 -
Glsi09g1223 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 481 527 IPR000408 -
Glsi09g1223 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 584 631 IPR000408 -
Glsi09g1223 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 530 579 IPR000408 -
Glsi09g1223 1016 SUPERFAMILY PH domain-like 14 121 - -
Glsi09g1223 1016 SMART fyve_4 633 702 IPR000306 GO:0046872
Glsi09g1223 1016 MobiDBLite consensus disorder prediction 792 813 - -
Glsi09g1223 1016 MobiDBLite consensus disorder prediction 138 152 - -
Glsi09g1223 1016 SUPERFAMILY FYVE/PHD zinc finger 635 713 IPR011011 -
Glsi09g1223 1016 Gene3D - 370 473 IPR009091 -
Glsi09g1223 1016 Gene3D - 166 369 IPR009091 -
Glsi09g1223 1016 ProSiteProfiles BRX domain profile. 957 1012 IPR013591 -
Glsi09g1223 1016 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 891 - -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 583 634 IPR000408 -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Glsi09g1223 1016 MobiDBLite consensus disorder prediction 791 827 - -
Glsi09g1223 1016 CDD FYVE_like_SF 645 697 - -
Glsi09g1223 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1223 Glsi-ChrGlsi09 8754893 8765959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1223 955 1013 Major Intrinsic Protein MIP AT1G31880 54.237 5.09e-16 79.3