Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1222 ATGCTTCTCACCCTCAATGAGAAGAACCCGCGTTGTATCTTCGAAGGTGAAGCTCTTCTGAGGAGGATGAACAGGTACGGTCTCCTCCATGAGAGCCAAAACAAACTCGATTATGTCTTGGCTTTTACCATCGAGAACTTCCTAGAGCGCCGACTCCAGACATTGGTCTTCAAGCTCAGCATGCCTAAGTCAATCCACCATGCTAGAGTGTTGATCAAACAGAGGCACATTAGGAAGGCAGGCAGGCAGGTGGTGAATATTCCTTCGTTTATGGTGAGGGTGGACTCACAGAAACACGTTGACTTCTCACAAACAAGTCCCTTGGGTGGTGGACGTCCGGGGCGAGTGAAGCGAAAGAACCAGAGGGCAGCTGCTAAGAAGGCTGCCGGCGGTGATGGAGATGAGGAAGATGAAGATTGA 420 0.5048 MLLTLNEKNPRCIFEGEALLRRMNRYGLLHESQNKLDYVLAFTIENFLERRLQTLVFKLSMPKSIHHARVLIKQRHIRKAGRQVVNIPSFMVRVDSQKHVDFSQTSPLGGGRPGRVKRKNQRAAAKKAAGGDGDEEDED 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1222 139 SUPERFAMILY Alpha-L RNA-binding motif 3 106 - -
Glsi09g1222 139 NCBIfam 30S ribosomal protein S4 5 108 IPR005710 GO:0003735|GO:0006412|GO:0015935
Glsi09g1222 139 Pfam S4 domain 50 94 IPR002942 GO:0003723
Glsi09g1222 139 CDD S4 50 95 - -
Glsi09g1222 139 Gene3D - 49 127 IPR036986 GO:0003723
Glsi09g1222 139 PANTHER 30S 40S RIBOSOMAL PROTEIN 2 125 IPR022801 GO:0003735|GO:0015935|GO:0019843
Glsi09g1222 139 MobiDBLite consensus disorder prediction 101 139 - -
Glsi09g1222 139 FunFam 40s ribosomal protein s9 49 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1222 Glsi-ChrGlsi09 8744805 8746533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1222 2 129 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 83.594 1.91e-74 218