Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1217 ATGTCTAGCAGAAGATCTCGTTCGAGGCAATCCGGTGTTTCTAGCACTGAAATCACTGATGCCCAGATCACCGATCTAGTCTCCAAGTTGCAACAGCTTATTCCTGAGCTTCGCGCAACACGCTCTGACAAGGTTTCAGCTGCTAAGGTGTTGCAGGAGACTTGCAACTACATAAAGAACTTGCACAGAGAAGTTGATGATCTCAGTGACCGATTATCAGAGCTTTTAGCCACCACAGACTCCAACAGTGCCCAAGCAGACATTATTAGGAGCTTGCTTATGTAA 285 0.4632 MSSRRSRSRQSGVSSTEITDAQITDLVSKLQQLIPELRATRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLATTDSNSAQADIIRSLLM 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1217 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 61 IPR011598 GO:0046983
Glsi09g1217 94 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Glsi09g1217 94 CDD bHLH_AtPRE_like 18 78 - -
Glsi09g1217 94 PANTHER TRANSCRIPTION FACTOR PRE 1 94 IPR044293 GO:0006355|GO:0040008|GO:0046983
Glsi09g1217 94 Gene3D - 21 90 IPR036638 GO:0046983
Glsi09g1217 94 FunFam Transcription factor ILI6 7 90 - -
Glsi09g1217 94 Coils Coil 58 78 - -
Glsi09g1217 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 82 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1217 Glsi-ChrGlsi09 8701449 8702081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1217 1 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 66.316 9.48e-34 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g1217 HLH 8.2e-06 No_clan