Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1215 ATGGCGGGGAAGTCTGATTCAGTGTCCATCCGGGTTCCCTATAAGAACCTCAGAAAGGAGGAAGTGGAATTGGTGGGTGTGATTGATGAAACCCACTATCGGATCCACCTTAGCTCTCCTTCTTCTAGCTCCTCTGAGTATGGGGCTCCCAATCACTCTACTGCTACTGCCCATCCAAGCAGGAACATTAGATTGATGATGCTGATTCTCAGCTCTACGGTTGCCGCCGGGGTTCAATTTGGATGGACGTTGCAGCTTTCTCTCTTGGCTCCGTATATTCAGAAGAAAGGCTTCATAATTGAGATTTTAATTGATACAGGAGGTAGTTATCCGATTGCTTCTTTGTTGGAACTACAAAATGACTTTGAATTTTTAACAGCAAAGCATGATATACCTGTTATGTTTGATGTCAACAGGAAGATGAATGAAGGGAGAGAAGTTTATCAAAAGGATCCGAAAGGGTACCCTTCTGAAGTAGATTTATATGATCTAGATGTTAGAGAAAGTGCATTCAGTTTGCTATTGAATTCTATTATTCTGAAAGGGGCACCTGGAGCGAACGGAGCAATCAAGGTTGCTTTCTTGGTTGTGTTTGCTCTTCTTGGCGTTCCCTTTGCTGTTACAGCAGAGTTGACTGCAGTTTCAGGTGGTGATCAAGGTAGAGGAGGGATGATGAAGGAGATTGAACAAGTTGAGAGATATGGTTTACAAAAAGTGCGACCTACATTGAAACTTGGTTTACGCAATTGCCTATCAAAGTTGGGGTTGCAAAGTTTCCAACTAATAAAGGCATGTGAGGCAGCGAGAGCTGCTTGTCTTTGGCTAAATATTAAGGGAGTATTTGTATGGGACCCTCCCCTATGCATTTCCCATCATCGCCAAGACACAGATTGGTGGGCCCTTCTGCTCCTCTTCTCAGGACTGGATTCGTCCCCAGTTTGTAGAATAAGGCTGCTCGAGTCCTCGTCATTTTTCTCCATCAAACCCCACTCTTTACCAAACCCTAAATCATCCGTCCCCCATGCATCATTTCTTCCTCTGAAGTCCTTTCGCCGTGCATAATATCATAGAGCTCTTAAAGATTTGAGGCAGGCCAATATTAGTAATGAAATGGCTTTCTTTCCGGCAAATTTCATGTTACAAAACCCTCACCAAGATGACCATCAACCACCACCTTCTCTCAGCTCACTTCTACCCTCGTGCACACCTCCGGATTATCATGGGGGAGCATCCTTTCTAGGCAAGAGATCTATGACATTTTCAGGAATTGAACTTGGTGAAGAAGCTATCGCTGAGGAAGATTTGTCTGATGATGGGTCGCAGGCAGGGGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGCTGGGAAATAAGCTAGAACCAGAGAGAAAAATGCAGCTGGCTAGGGCTCTTGGGCTGCAGCCTAGGCAGATTGCTATATGGTTCCAAAACAGGAGGGCTAGGTGGAAGACTAAGCAGTTGGAGAAAGACTATGATATTCTCAAAAGACAATATGATGCTATCAAGGCAGACAATGAAGCACTGCAAGCTCATAACCAAAAACTCCAGGCAGAGATATTGGCACTGAAAAGCAGAGAGCCAACTGAATCTATCAACCTCAATAAGGAAACAGAGGGATCCTGCAGTAATAGAAGTGAAAACAGCTCAGATATTAAGTTGGATATCTCAAGAACACCAGCCATAGACAGTCCTTTATCCACCCATCAGACCAGCAGATCCCTCTTCCCATCTTCTGCTAGGCCTTCGGGGGTGGCTCAGCTTTTTCAAACCTCTTCAAGGCCAGATCTTCAATGCCAAAAGATTGATCAGATAGTCAAAGAAGAGAGCTTGAGCAACATGTTTTGTGGCATTGATGATCAAACTGGGTTCTGGCCATGGTTGGAGCAGCAACAATTCAATTGA 1947 0.4448 MAGKSDSVSIRVPYKNLRKEEVELVGVIDETHYRIHLSSPSSSSSEYGAPNHSTATAHPSRNIRLMMLILSSTVAAGVQFGWTLQLSLLAPYIQKKGFIIEILIDTGGSYPIASLLELQNDFEFLTAKHDIPVMFDVNRKMNEGREVYQKDPKGYPSEVDLYDLDVRESAFSLLLNSIILKGAPGANGAIKVAFLVVFALLGVPFAVTAELTAVSGGDQGRGGMMKEIEQVERYGLQKVRPTLKLGLRNCLSKLGLQSFQLIKACEAARAACLWLNIKGVFVWDPPLCISHHRQDTDWWALLLLFSGLDSSPVCRIRLLESSSFFSIKPHSLPNPKSSVPHASFLPLKSFRRAXYHRALKDLRQANISNEMAFFPANFMLQNPHQDDHQPPPSLSSLLPSCTPPDYHGGASFLGKRSMTFSGIELGEEAIAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQYDAIKADNEALQAHNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQTSRSLFPSSARPSGVAQLFQTSSRPDLQCQKIDQIVKEESLSNMFCGIDDQTGFWPWLEQQQFN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1215 648 Pfam Homeodomain 445 498 IPR001356 GO:0003677
Glsi09g1215 648 MobiDBLite consensus disorder prediction 548 564 - -
Glsi09g1215 648 Coils Coil 492 540 - -
Glsi09g1215 648 FunFam Homeobox-leucine zipper protein ATHB-13 437 504 - -
Glsi09g1215 648 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 432 580 IPR045224 GO:0003700
Glsi09g1215 648 ProSiteProfiles 'Homeobox' domain profile. 440 500 IPR001356 GO:0003677
Glsi09g1215 648 CDD homeodomain 445 501 IPR001356 GO:0003677
Glsi09g1215 648 SUPERFAMILY Homeodomain-like 439 502 IPR009057 -
Glsi09g1215 648 SMART HOX_1 443 504 IPR001356 GO:0003677
Glsi09g1215 648 Gene3D - 437 506 - -
Glsi09g1215 648 PRINTS Lambda-repressor HTH signature 480 496 IPR000047 GO:0003677
Glsi09g1215 648 PRINTS Lambda-repressor HTH signature 471 480 IPR000047 GO:0003677
Glsi09g1215 648 MobiDBLite consensus disorder prediction 381 400 - -
Glsi09g1215 648 ProSitePatterns 'Homeobox' domain signature. 475 498 IPR017970 GO:0000981|GO:0006355
Glsi09g1215 648 MobiDBLite consensus disorder prediction 545 564 - -
Glsi09g1215 648 Pfam Homeobox associated leucine zipper 500 540 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1215 Glsi-ChrGlsi09 8684671 8694273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1215 367 648 Homeobox Transcription Factor Family AT1G69780 63.880 2.50e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi09g1215 Homeodomain 4.6e-15 CL0123