Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1212 ATGAAGAAGCAGCAGCAGGAGCAGCTGGGGAAGGAAGATTCCAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAAGATGATATACTTAGAAAGCAGATTAGCATCCATGGAACTGAAAATTGGGCAATTATTGCGTCTAAATTCAAGGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCGGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTATCAGGCAGAACGGATAACGCTGTGAAAAATCGTTTCTCCACACTCTGCAAAAAGAGAGCAAAATTTGAAGCCTTGGCAAAAGAGAATAGCACTTCGTGCATGAATTCAAATAACAAAAGGATTATTTTCCGACATGGTTCTAACACAGACGCAACATCAGAGGAGGCTGCAGCACCTACTAAGAGGATAAGGAGGGCACACATCCCTGATGCTGCAGAAAAGATGAACTTTGGAGACAGATCCCATAAGCAATGTGGAACACCAATAAATCAGCAGCCAAGAGCGCCGTTTGCAATGTTAGCTAAAAACTTGGTTGATGTCAAGAAGTTACCAGACCAGCATCATGCTTCCAGTACCAAGTTCAGCAGTAACGTCCAGGATAGCAAAACTCAAGGAACATTTCTTAAAGAGGACGATCCAAAGATAAACGTATTGATGGAACAAGCAGAATTACTAAGTTCACTAGCTCTAAAAGTTAATACAGATGACATGGATCAGAGTCTTGAAAACGCATGGAAGGTGCTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGATATTCTCAAGTATAAGATTCCAGATTTACAACTCGTAGATCTTAAAGATATGATGGAGGACGTAAAGAGTAGTAATGAGGGAAGCCAGCAATGTTGGAGGCAACCAGAACTATATGAAGACTCTCCAAGCAGTTCTGAATACAGTACAGGATCAACTCTCCTGCCCCATTCAGCTGGTGATAATTTGGAACACTCGCTGCATCAGGATATTGGAACCGAATTAAATTCTATCCAACTTGGAGATAAAAAAGGAGTTAGTGAATGTGGGAAAGGGATTCTTTCTGCTGCAACTGTGGGTCAAGGTATCTACCCATCTTGTGAGGAACAGATATGCAATGACGGCATTGTTTCTGCCTCATCAAGCACAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTCTGTTCAGATCTTTGGCTGCAGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGAAACTTCCTAATGAAAACGCTTGGAATAGAGTCCCCTTCCATGAACCCAAGTACCAACCCCTCCCAACCACCGCCCTGCAAAAGAGCCCTACTACACAGTCTATAA 1422 0.4255 MKKQQQEQLGKEDSKKKERHIVTWTQEEDDILRKQISIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKFEALAKENSTSCMNSNNKRIIFRHGSNTDATSEEAAAPTKRIRRAHIPDAAEKMNFGDRSHKQCGTPINQQPRAPFAMLAKNLVDVKKLPDQHHASSTKFSSNVQDSKTQGTFLKEDDPKINVLMEQAELLSSLALKVNTDDMDQSLENAWKVLQEFLNRTKESDILKYKIPDLQLVDLKDMMEDVKSSNEGSQQCWRQPELYEDSPSSSEYSTGSTLLPHSAGDNLEHSLHQDIGTELNSIQLGDKKGVSECGKGILSAATVGQGIYPSCEEQICNDGIVSASSSTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGIESPSMNPSTNPSQPPPCKRALLHSL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1212 473 Gene3D - 12 72 - -
Glsi09g1212 473 MobiDBLite consensus disorder prediction 449 473 - -
Glsi09g1212 473 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Glsi09g1212 473 FunFam Transcription factor MYB124 75 143 - -
Glsi09g1212 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Glsi09g1212 473 FunFam Transcription factor MYB124 16 72 - -
Glsi09g1212 473 CDD SANT 76 117 IPR001005 -
Glsi09g1212 473 Gene3D - 75 145 - -
Glsi09g1212 473 ProSiteProfiles Myb-like domain profile. 24 67 IPR001005 -
Glsi09g1212 473 MobiDBLite consensus disorder prediction 312 345 - -
Glsi09g1212 473 PANTHER MYB PROTEIN-RELATED 23 210 - -
Glsi09g1212 473 Pfam Myb-like DNA-binding domain 24 84 - -
Glsi09g1212 473 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Glsi09g1212 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 71 IPR017930 -
Glsi09g1212 473 CDD SANT 23 67 IPR001005 -
Glsi09g1212 473 SMART sant 20 69 IPR001005 -
Glsi09g1212 473 SMART sant 72 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1212 Glsi-ChrGlsi09 8660123 8665360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1212 62 473 MYB Transcription Factor Family AT1G14350 53.865 4.26e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g1212 Myb_DNA-bind_6 1.7e-15 CL0123