Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1210 ATGGGTAACTGCCTAGATTCTTCTGCTAAAGTTGATACAGCTCAAAGTTCGCGAACTTCTGCATCAGGAATTTCAAAATCTAGTCCTTCTTCTGCTCCTTCCAGCTTATCTATTCCATCATACAGCGGAAAAAGCAATGCCTCAAGTCTTCCCACGCCAAGGTCAGAGGGTGAAATCTTGTCTTCTCCAAATCTAAAGGCCTTCACGTTCAATGAGCTAAAATATGCCACCAGAAATTTTCGTCCTGACAGTCTTCTTGGTGAAGGGGGATTTGGCTATGTTTATAAGGCATGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTGAAAAGGCTAAAACCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACAGAAGTTAACTATCTTGGGCAACTCCACCATCCTAATCTGGTTAAATTAATTGGGTATTGCTTGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGGCCTCAGCCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGGGCTGCCAGAGGGCTTTCTTTTCTCCATAATGCCAAATCGCAAGTCATATACCGTGATTTTAAAGCTTCTAATATCCTGCTTGATGCTGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCTAAGGCTGGTCCTACTGGGGATAGAACTCATGTGTCGACTCAAGTCATGGGTACTCATGGATATGCAGCTCCTGAATATGTTGCTACAGGTCGGTTGACGGCCAAAAGTGATGTATATAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGGCGTGCTGTTGATAAATCAAAGGGTGTAGAGCAGAATCTGGTAGACTGGGCAAAGCCATATTTGGGTGACAAACGCAGACTATTTCGGATCATGGACACCAAGTTGGAGGGCCAATACCCACAAAAGGGAGCCTGCACGGCTGCTAATCTTGCCCTACAGTGCCTGAATAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGCAACTCTGGAACAGATTGAAGCCCCCAAAAATGCAGGCAGACACTCCCAATCAGAGCAGCAGAGAGCCCACACTCCTGTAAGAAATTCTCCGGCACGATACAGGTCTCCTCTAAATCTGACTCCAACTGCATCGCCATTGCCAACCCACCGGCAATCTGCTCGTGTACACTAA 1242 0.4573 MGNCLDSSAKVDTAQSSRTSASGISKSSPSSAPSSLSIPSYSGKSNASSLPTPRSEGEILSSPNLKAFTFNELKYATRNFRPDSLLGEGGFGYVYKAWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKGVEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGACTAANLALQCLNSEAKARPPMTEVLATLEQIEAPKNAGRHSQSEQQRAHTPVRNSPARYRSPLNLTPTASPLPTHRQSARVH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1210 413 MobiDBLite consensus disorder prediction 366 413 - -
Glsi09g1210 413 MobiDBLite consensus disorder prediction 1 58 - -
Glsi09g1210 413 FunFam Serine/threonine-protein kinase BIK1 47 165 - -
Glsi09g1210 413 FunFam Probable serine/threonine-protein kinase PBL8 166 379 - -
Glsi09g1210 413 Gene3D Transferase(Phosphotransferase) domain 1 166 387 - -
Glsi09g1210 413 MobiDBLite consensus disorder prediction 367 406 - -
Glsi09g1210 413 ProSiteProfiles Protein kinase domain profile. 80 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1210 413 ProSitePatterns Protein kinases ATP-binding region signature. 86 118 IPR017441 GO:0005524
Glsi09g1210 413 Gene3D Phosphorylase Kinase; domain 1 56 165 - -
Glsi09g1210 413 PANTHER OS01G0588500 PROTEIN-RELATED 32 363 - -
Glsi09g1210 413 CDD STKc_IRAK 86 362 - -
Glsi09g1210 413 Pfam Protein tyrosine and serine/threonine kinase 84 358 IPR001245 GO:0004672|GO:0006468
Glsi09g1210 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Glsi09g1210 413 SUPERFAMILY Protein kinase-like (PK-like) 51 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1210 Glsi-ChrGlsi09 8643659 8646958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1210 56 359 Glycoside Hydrolase AT3G07070 52.922 1.64e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi09g1210 PK_Tyr_Ser-Thr 1.4e-47 CL0016