Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1209 ATGGGAATTTGTTTGAGCAGGAGTGCTCAGGATCCCAACCAACCACTCTATAATATAGCTCAACCTCCTATTGGTATGCCCTGCATAGTCAATAATCTAGCATTGCATTTGATGCTCAAGTTCCCTTCTTCAAGAAAACATGCAAAGGAGGGAAGACCATGCTTTCTAAATGAACAGAAGAATCTGTTTATTGTTTCAAAAAATCAAAGAGGAAGGCAGAGTAACATACCTAATCCAAGGGATTGGGATGTTCTGGAAGTTGATAAGGGTATAGGTTTCCAGACTCGTAATCTCAAGCGTTTTTGCTATAGAGTCCTGAAAGAAGCCACCTGCAACTTCAGAAGTAAGAACTTAATAGGGCAGGGGGGGTTTGGTGATGTTTTTAAGGGATATCTCACAAACTGCACCATGAATGCTGCAAAACCAAACAAGGGATTTCCCATAGCTGTGAAGAGAATAAGGAGGCCAGGAGCACAAGGCCATGAAGAATGGCTGAAAGAAGTGGTATATTTGAGCAAAATAAATCATCCGAACGTAGTGGAGCTCATAGGGTATTGCTGTGAGGCTGAGCATAGAATGCTGGTTTATGAATACATGATTGGAGGAAGCTTGGAGGACCATCTTTTGGAAGAAAACGGTGCAAAGCTAAACTGGACTAGAAGAATTAATATAGCACTCGGGGCAGCCAGGGGTTTGGATTATCTTCACACCTGTGGAAGGCCCGTCATTCATCGTGATATTAAATCTTCCAATATCCTGCTGGATGCTAAACGCAATGCAAAGCTCTCAGACTTTGGACTGGCAAGAGATGGACCTGAAGGAGACCAATCCCACGTATCCACAAGAATCCTTGGCACTAAAGGCTATTTTGCTCCAGAGTACTTCGCCACAGGGCATTTAACTCTAAAAGCTGATGTATACAGCTTCGGAGTGGTTATGCTGGAGATTTTGTCTGGCTCTGGTGCACTCAGGAAACATTCAGATGGAGGGATAGGGAATCTTGCCCATTGGGCTGAACCATTTCTAAGCAACATGCAGGAACTTCACAATGTCATTGATAAGAGACTAGGAAACAATTTTCCTATGGAAGAAGCCTGTGAGTTAGCTCGATTGATACTAAGCTGCCTCTGCTCAAATCCCAAGCAGCGCCCAACAATGGCTGAAGTTGTGACTGTGTTAGAGCAACTAGAGCTAAACTTAGGATTGCAAAGAAAGAGATCATATGGTAGAGCTAAAGAAAAAGAAAAAAATAAACTTGCTGAAGAATACTTCTGTAGCTTGTGGAAATATGATCTCAATGTTCTGTTGATTATAACTCAAAATTGCGGAGTACAAATCTCAGCACATGCTATCAAAAACACATTCTGA 1368 0.4218 MGICLSRSAQDPNQPLYNIAQPPIGMPCIVNNLALHLMLKFPSSRKHAKEGRPCFLNEQKNLFIVSKNQRGRQSNIPNPRDWDVLEVDKGIGFQTRNLKRFCYRVLKEATCNFRSKNLIGQGGFGDVFKGYLTNCTMNAAKPNKGFPIAVKRIRRPGAQGHEEWLKEVVYLSKINHPNVVELIGYCCEAEHRMLVYEYMIGGSLEDHLLEENGAKLNWTRRINIALGAARGLDYLHTCGRPVIHRDIKSSNILLDAKRNAKLSDFGLARDGPEGDQSHVSTRILGTKGYFAPEYFATGHLTLKADVYSFGVVMLEILSGSGALRKHSDGGIGNLAHWAEPFLSNMQELHNVIDKRLGNNFPMEEACELARLILSCLCSNPKQRPTMAEVVTVLEQLELNLGLQRKRSYGRAKEKEKNKLAEEYFCSLWKYDLNVLLIITQNCGVQISAHAIKNTF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1209 455 CDD STKc_IRAK 119 396 - -
Glsi09g1209 455 ProSitePatterns Protein kinases ATP-binding region signature. 119 151 IPR017441 GO:0005524
Glsi09g1209 455 ProSiteProfiles Protein kinase domain profile. 113 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1209 455 Pfam Protein tyrosine and serine/threonine kinase 116 392 IPR001245 GO:0004672|GO:0006468
Glsi09g1209 455 PANTHER OS01G0588500 PROTEIN-RELATED 95 397 - -
Glsi09g1209 455 SMART serkin_6 113 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1209 455 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 199 407 - -
Glsi09g1209 455 SUPERFAMILY Protein kinase-like (PK-like) 94 399 IPR011009 -
Glsi09g1209 455 FunFam Serine/threonine-protein kinase BIK1 84 198 - -
Glsi09g1209 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Glsi09g1209 455 Gene3D Transferase(Phosphotransferase) domain 1 199 418 - -
Glsi09g1209 455 Gene3D Phosphorylase Kinase; domain 1 85 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1209 Glsi-ChrGlsi09 8641161 8643619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1209 86 393 Glycoside Hydrolase AT3G07070 46.624 1.77e-84 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi09g1209 PK_Tyr_Ser-Thr 5.7e-53 CL0016