LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g1200	ATGATGTTGCAGCTACAATTTCTATCTTCTTCTTCTTCTTCTTCCTCACTCACTACACAATACTCCATTAAGGTCTGTCCTAACTACAGCTTCTCTCCGAAGTCTTTTCCTTTTGGCCGCGCTTCTAAGCCCAGTGGCTCAAGCTTCTCCCTTTCCCCACCATCCTCCCGCAGAAACACAATCTCTATCAAATGCCGCCAATCCGAGTACTTCGACCAGCAAAGCTTCACGAAACCCACTAGAAATGCAAACGGAAGTGGTCCAGTTGGAGCTCTGCCACCTAGGGTTTATGTGGGCCACTCGATTTACAAGGGGAAGGCTGCGCTCACTGTGACCCCTAGGCCTCCAGAGTTTGCGCCTTTGGAGTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCCGTTGGTATGCGCCAATATGACTGGAACAGGAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATCTAATTAGCCTTGGTGCAAGGGATTCCTTTGAATTTTTTCATGATCCTTTTAAGGGGAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGCCACTTTTTTAACCTCAGTGTTCAAAACAAGATTGAGAACTTGGATGAAAACATCTATATCCCTGTGACAAAGGCAGAGTTATCAGTTTTCACCTCAATTTTCAATTTTATCATGCCATACCTTCTAGGTTGGCATGCATTTGCGAATTCCATAAAGCCTGAGGATCCCAGCCCCAACCCAAGATTCGGAGGAGACTATGAATGGAGCAGATAA	825	0.4582	MMLQLQFLSSSSSSSSLTTQYSIKVCPNYSFSPKSFPFGRASKPSGSSFSLSPPSSRRNTISIKCRQSEYFDQQSFTKPTRNANGSGPVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLESGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNLISLGARDSFEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKIENLDENIYIPVTKAELSVFTSIFNFIMPYLLGWHAFANSIKPEDPSPNPRFGGDYEWSR	274

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g1200	274	SUPERFAMILY	ssDNA-binding transcriptional regulator domain	94	274	IPR009044	GO:0003677\|GO:0006355
	Glsi09g1200	274	Gene3D	Transcriptional Coactivator Pc4; Chain A	88	258	IPR009044	GO:0003677\|GO:0006355
	Glsi09g1200	274	PANTHER	SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL	62	274	IPR013742	GO:0003697\|GO:0006355\|GO:0006952
	Glsi09g1200	274	Pfam	Whirly transcription factor	102	236	IPR013742	GO:0003697\|GO:0006355\|GO:0006952
	Glsi09g1200	274	FunFam	Single-stranded DNA-binding protein WHY2, mitochondrial	88	261	-	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g1200	Glsi-ChrGlsi09	8575785	8578411	Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g1200	49	274	Whirly Transcription Factor Family	AT1G14410	65.217	7.73e-112	321

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Whirly	Glsi09g1200		Whirly	2.7e-61	CL0609

Showing 1 to 1 of 1 entries