Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1200 ATGATGTTGCAGCTACAATTTCTATCTTCTTCTTCTTCTTCTTCCTCACTCACTACACAATACTCCATTAAGGTCTGTCCTAACTACAGCTTCTCTCCGAAGTCTTTTCCTTTTGGCCGCGCTTCTAAGCCCAGTGGCTCAAGCTTCTCCCTTTCCCCACCATCCTCCCGCAGAAACACAATCTCTATCAAATGCCGCCAATCCGAGTACTTCGACCAGCAAAGCTTCACGAAACCCACTAGAAATGCAAACGGAAGTGGTCCAGTTGGAGCTCTGCCACCTAGGGTTTATGTGGGCCACTCGATTTACAAGGGGAAGGCTGCGCTCACTGTGACCCCTAGGCCTCCAGAGTTTGCGCCTTTGGAGTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCCGTTGGTATGCGCCAATATGACTGGAACAGGAAGCAGGTATTCTCTCTATCAGTGAGTGAAATGGGAAATCTAATTAGCCTTGGTGCAAGGGATTCCTTTGAATTTTTTCATGATCCTTTTAAGGGGAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGCCACTTTTTTAACCTCAGTGTTCAAAACAAGATTGAGAACTTGGATGAAAACATCTATATCCCTGTGACAAAGGCAGAGTTATCAGTTTTCACCTCAATTTTCAATTTTATCATGCCATACCTTCTAGGTTGGCATGCATTTGCGAATTCCATAAAGCCTGAGGATCCCAGCCCCAACCCAAGATTCGGAGGAGACTATGAATGGAGCAGATAA 825 0.4582 MMLQLQFLSSSSSSSSLTTQYSIKVCPNYSFSPKSFPFGRASKPSGSSFSLSPPSSRRNTISIKCRQSEYFDQQSFTKPTRNANGSGPVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLESGAFKVSREGYVLLQFAPAVGMRQYDWNRKQVFSLSVSEMGNLISLGARDSFEFFHDPFKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKIENLDENIYIPVTKAELSVFTSIFNFIMPYLLGWHAFANSIKPEDPSPNPRFGGDYEWSR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1200 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 94 274 IPR009044 GO:0003677|GO:0006355
Glsi09g1200 274 Gene3D Transcriptional Coactivator Pc4; Chain A 88 258 IPR009044 GO:0003677|GO:0006355
Glsi09g1200 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 274 IPR013742 GO:0003697|GO:0006355|GO:0006952
Glsi09g1200 274 Pfam Whirly transcription factor 102 236 IPR013742 GO:0003697|GO:0006355|GO:0006952
Glsi09g1200 274 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 88 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1200 Glsi-ChrGlsi09 8575785 8578411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1200 49 274 Whirly Transcription Factor Family AT1G14410 65.217 7.73e-112 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Glsi09g1200 Whirly 2.7e-61 CL0609