Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1199 ATGATTTCCTATGAAATTTATTCTTTCTGTACTCCATTTCGTGTACTAAGGTCCTCTCCATGGAGACGAACAAATATGGGATTGTTGATTTTTCTTCCTTCCAAGAGAAACATGAGCTTCTTCCCGAGCATCGTTTGCTCATCTGTTAGCGGCGAATCTTTTTCATTGCCAAAGCCAAACCAGTTGGGTTATAGTCAGGAGCTGTTTGGTTTGGAGGTGGAACTCAAGCCAAGGAAAGCTGGCTCTCAAACATCAGAACCAAGGTCATGGTTTGGTCCAAATGGACAGTATATCAGAGAGTTACCTTGTCCGAGCTGCCGGGGAAGGGGTTATACTCCTTGTACAGATTGTGGAATTGAAAGATCAAGATTAGACTGTCCAAAGTGTAGTGGGAAGGGTATAGTGACTTGCCACCAGTGCTCAGGAGATTGCGTTACATGGGAAGAATCAATTGATGAACAACCATGGGAAAGAGCTCGTTCTATTTCCCCACTCAAAGTGCAGGAAGATGATGAAGTTGACAATTTAGACATAAAGTTGGATGTGAAGAAAAAATCAAAGCGTGTTTACCAGTCACCGCCTCCTGAAGTTGGATTAAAGATTAGTCGTTCCTTAAAAAGTCTCAATGAAAAAACTGGGCTGTTCAGTAAGAGAATGAAGATCATCCATCGCAATCCGATGCTTCATGCACAGAGAGTGGCTGCAATTAAGAAAACCAAGGGAACTGCTGCAGCAAGAAAGCGTAGCTCTGAAACTATGAAAGCTTTCTTTAGTAATCCAGAAAACCGCCTGAAAAGGAGCATTGCCATGAAGGGAGTGAATTTCTTCTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTTAAGGATAGTTTGATCCATAGGCAATTCACGTGTGGGCTATGTGGGGAAAAAGGACATAACAGAAGAACATGTAGCAAGTTAAGGATTAGCCATAGTAATGGGAGACTCATAAAACATCATCGTTGTAAAATATGTCGTCAATATGGGCATAATAGCAGGACATGCCCTCTAGCAGCAGCCAGCAATACAAGAAGGGACTTGGCGTCTCGAAGAACATACAAGTGTCGGCTGTGCCTCAAAAAAGGACACAATATTAGGACATGTCCTAGAAGAGTTAGTACTGAACATCCTTCTGATTAA 1179 0.4266 MISYEIYSFCTPFRVLRSSPWRRTNMGLLIFLPSKRNMSFFPSIVCSSVSGESFSLPKPNQLGYSQELFGLEVELKPRKAGSQTSEPRSWFGPNGQYIRELPCPSCRGRGYTPCTDCGIERSRLDCPKCSGKGIVTCHQCSGDCVTWEESIDEQPWERARSISPLKVQEDDEVDNLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNEKTGLFSKRMKIIHRNPMLHAQRVAAIKKTKGTAAARKRSSETMKAFFSNPENRLKRSIAMKGVNFFCQNCGREGHRRHYCPELKDSLIHRQFTCGLCGEKGHNRRTCSKLRISHSNGRLIKHHRCKICRQYGHNSRTCPLAAASNTRRDLASRRTYKCRLCLKKGHNIRTCPRRVSTEHPSD 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1199 392 SMART c2hcfinal6 367 383 IPR001878 GO:0003676|GO:0008270
Glsi09g1199 392 SMART c2hcfinal6 334 350 IPR001878 GO:0003676|GO:0008270
Glsi09g1199 392 SMART c2hcfinal6 276 292 IPR001878 GO:0003676|GO:0008270
Glsi09g1199 392 SMART c2hcfinal6 303 319 IPR001878 GO:0003676|GO:0008270
Glsi09g1199 392 Gene3D - 329 391 - -
Glsi09g1199 392 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 72 318 - -
Glsi09g1199 392 Pfam Zinc knuckle 364 382 IPR025829 -
Glsi09g1199 392 Gene3D - 273 320 - -
Glsi09g1199 392 ProSiteProfiles Zinc finger CCHC-type profile. 277 292 IPR001878 GO:0003676|GO:0008270
Glsi09g1199 392 SUPERFAMILY Retrovirus zinc finger-like domains 274 320 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1199 13 391 C2H2 Transcription Factor Family AT5G20220 58.040 1.18e-156 446