Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1197 ATGCAAATGCAACCCGATGTTAGCTCCTGCTTTAAGTACCAAACATTTCAGGGAACCTTCAGCTGCCGGAGCACTGGAAGGTCCTGTATTTCAACTTCGGTTGGGATTGGCTCAGCTTGCTCTGTCAAGTCCAAAAATCTTGAGCCATTCTTAGCCGTTAGCATGTCAAAGGGTTTAAAGAAAGAAATTATGGAAAAACTAAACAATCGCTTCTTTTCTTTCTTTTTCTTTTTCTGTTTGGTAACCATACCTACCCTGCATGCAAATGATTTAGAGCATGAAGAGTATTGGGAAGAACGCGTCAAGGAGTATGACGAGTATTGGAAAGAAAGAGAAAAAAATGCTGAAATTGCCAACAGTGAAGCCTATGAACCTCACCCTTTTGAAATTTCCGGCAACCTCACTGCTATTGTTGAGAAGAGCTTGAAGAGTGTAGGGGCAGTGAGAAGGGGAGGACACAAAATTAACATGGGTCCATGCCTGGCCACCAATCCCATTGACAGGTGCTGGAGGTGCGATCCCAACTGGGCGAAAAACCGCCAGAAGCTAGCAGATTGCGTGCAGGGCTTTGGCCGACACACTACTGGTGGAAAGGGTGGCCCATACTACGTGGTGACAGATCCCTCAGATAGTGATCTGGTCAATCCCAAAGTTGGTACCCTTCGCCATGCAGTTACACGAACTGGACCCTTGTGGATCATCTTTGCGCACAGCATGGTGATAAGGCTCACGCAGGAGCTCATTGTGACTGGGGATAAGACCATTGATGGCAGAGGAGTCGATGTTGTTATCACTAAAGGAGCTGGTATCACATTACAGTATGTCAAGAATGTGATTATTCACGGGATTAAAATTTTTGACATTGTGCCTGGCCAAGGTGGAACGATTATAGATAGTGAGACCCACTGGGGTTTTAGGACACGGAGCGATGGTGATGGAATTTCAATCTTCGGCTCCAGCAACATTTGGATTGACCATGTTTCCATGAGTAATACCGCTGATGGACTCATAGATATCATTATGGGATCCACTGCCATTACCATCTCCAACAGCCATTTCACAAGACACAACGAGGCTATGCTGTTCGGTGCCAGTGACGGCTACTCTGGGGATAAGATTATGCAAGTCACTTTGGCATTCAACCACTTTGGAAAGGATATAGTCCAAAGGATGCCAAGGTGTAGATATGGTTTTTTCCATCTTGTCAACAATGACTACACTCACTGGAACATGTATGCCATTGGCGGTAGCAAGAACCCCACCATTATTAGTGAGGGTAACCGATTCATAGCCCCGGACAACCCCAGGCTCAAAGAGGTGACAAAGCGAGAGTACTCACCGGAGAATGATTGGAAGAATTGGCAATGGAGATCAATTGGCGATCTATTCTTAAATGGGGCATATTTCATTGAAGGTGGGCCTGCACTGAATGATAAGAGACCATTCTCAAAGAAGGACATGATCAAAGCAAGGCCTGGAACATTTGTGGGCAGACTCACACGCTATTCTGGCATCCTGCATTGCCGACGTATCTTGTCTCAGTTTCATGTTGGTGTAAACCTATGCATACTCCTGTCTGGTTTCAGTTCTGTTATGGCTGCAAGTGAACAGATGACTACAAATAATACTTTTTCAGACTTTGATTTCATCAAAGCATCGGTTGGGATAACTTTAAGTAAACCATATTGTCGTCTTTTGGCCTTGGCTGCTGAGAAACAGAAGTGTGAAATGGAGTTCGCTTCTGTGAAATCTGAATTGAGCCTGACAAGTCATAGGTCGTTGGTGATGGATGGTGAGACTAATGCTAGTAATAAGGGTGCCAAAAGGCGGCGAAGAGATTCATCTATGGCCATATTAGGGGACAATGAACAACCACAAGAACGGCAGCCACAGAGTGATCAATCAGCCACCAACGTCAAGAGAAGTTCGAGGTTCCGGGGAGTAAGCAGACATAGGTGGACTGGGAGGTTTGAAGCTCATCTATGGGATAAAGGTACCTGGAATCCAACTCAGAAGAAGAAAGGAAAACAAGGGGCTTATAATGATGAAGAAGCTGCTGCAAGATCTTATGATTTAGCTGCGCTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGAAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTGGCAAGGCACCATCACAACGGAAGATGGGAAGCAAGGATAGGGAGAGTGTTCGGCAACAAGTACCTCTACCTAGGGACTTACAGTACGCAAGAAGAGGCTGCTCGTGCATATGACATAGCAGCAATTGAGTACAGAGGCATAAGCGCAGTGACAAACTTTGACTTGAGCACATACATCAGATGGCTAAGACCAGAAGCACATTCTATAACTAGTCTAGAGGATAAGCTAAGCTCAGGTCCTCAGGCCATGACAACCTCTAACCTCATCGAAACCAGAGGAACCACTGAGCTATCCAACTTCAACCTGCATCATCCATTCCCCTCAGGTGACTTGGACAGTACCAAGAAGCAAGGCATTTCACAATATATGAACCCTCTAAATCCTTGCAATAAGTCATCTTCCCCAACAGCATTAGGACTTCTTCTGAAATCCTCAGTGTTTAGAGAGCTGATGCAGAGAAATCTGAATTCTGCTAATAAAGAAGCTGAAGGAAGTGAACTGAAAATCCCACAAGATTTTGCTAATGAAATTGCCAGTACCTCTTACTTATGCTCTTCTAATAGCAAAAGATTTTGCTTGGAGTCACCAGAAGAAAGCACATTGCCACTGTATAATAGAACAGTGCAATCCCTATGGAATGGTGCTTTAAACATGTCTGACTGA 2904 0.4432 MQMQPDVSSCFKYQTFQGTFSCRSTGRSCISTSVGIGSACSVKSKNLEPFLAVSMSKGLKKEIMEKLNNRFFSFFFFFCLVTIPTLHANDLEHEEYWEERVKEYDEYWKEREKNAEIANSEAYEPHPFEISGNLTAIVEKSLKSVGAVRRGGHKINMGPCLATNPIDRCWRCDPNWAKNRQKLADCVQGFGRHTTGGKGGPYYVVTDPSDSDLVNPKVGTLRHAVTRTGPLWIIFAHSMVIRLTQELIVTGDKTIDGRGVDVVITKGAGITLQYVKNVIIHGIKIFDIVPGQGGTIIDSETHWGFRTRSDGDGISIFGSSNIWIDHVSMSNTADGLIDIIMGSTAITISNSHFTRHNEAMLFGASDGYSGDKIMQVTLAFNHFGKDIVQRMPRCRYGFFHLVNNDYTHWNMYAIGGSKNPTIISEGNRFIAPDNPRLKEVTKREYSPENDWKNWQWRSIGDLFLNGAYFIEGGPALNDKRPFSKKDMIKARPGTFVGRLTRYSGILHCRRILSQFHVGVNLCILLSGFSSVMAASEQMTTNNTFSDFDFIKASVGITLSKPYCRLLALAAEKQKCEMEFASVKSELSLTSHRSLVMDGETNASNKGAKRRRRDSSMAILGDNEQPQERQPQSDQSATNVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARSYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGISAVTNFDLSTYIRWLRPEAHSITSLEDKLSSGPQAMTTSNLIETRGTTELSNFNLHHPFPSGDLDSTKKQGISQYMNPLNPCNKSSSPTALGLLLKSSVFRELMQRNLNSANKEAEGSELKIPQDFANEIASTSYLCSSNSKRFCLESPEESTLPLYNRTVQSLWNGALNMSD 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1197 967 SMART rav1_2 743 807 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 SMART rav1_2 644 713 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 ProSiteProfiles AP2/ERF domain profile. 743 801 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 PANTHER PECTATE LYASE 18-RELATED 120 509 IPR045032 GO:0030570
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 412 431 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 186 203 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 454 478 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 390 409 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 210 235 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 485 508 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 246 262 IPR018082 -
Glsi09g1197 967 PRINTS Pollen allergen Amb family signature 310 331 IPR018082 -
Glsi09g1197 967 CDD AP2 742 803 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 Pfam AP2 domain 643 699 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 Pfam AP2 domain 742 793 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 Pfam Pectate lyase 249 429 IPR002022 -
Glsi09g1197 967 Coils Coil 895 915 - -
Glsi09g1197 967 MobiDBLite consensus disorder prediction 603 617 - -
Glsi09g1197 967 Gene3D AP2/ERF domain 643 709 IPR036955 GO:0003700|GO:0006355
Glsi09g1197 967 Gene3D AP2/ERF domain 742 803 IPR036955 GO:0003700|GO:0006355
Glsi09g1197 967 MobiDBLite consensus disorder prediction 595 646 - -
Glsi09g1197 967 CDD AP2 643 709 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 SUPERFAMILY Pectin lyase-like 164 505 IPR011050 -
Glsi09g1197 967 MobiDBLite consensus disorder prediction 619 643 - -
Glsi09g1197 967 FunFam AP2-like ethylene-responsive transcription factor 742 803 - -
Glsi09g1197 967 Pfam Pectate lyase, N terminus 101 144 IPR007524 GO:0030570
Glsi09g1197 967 ProSiteProfiles AP2/ERF domain profile. 644 707 IPR001471 GO:0003700|GO:0006355
Glsi09g1197 967 SUPERFAMILY DNA-binding domain 643 709 IPR016177 GO:0003677
Glsi09g1197 967 SMART amb_all 238 435 IPR002022 -
Glsi09g1197 967 Gene3D - 163 507 IPR012334 -
Glsi09g1197 967 SUPERFAMILY DNA-binding domain 742 803 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1197 Glsi-ChrGlsi09 8554060 8562607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1197 67 509 Polysaccharide Lyase AT1G14420 56.863 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi09g1197 Pectate_lyase_4 3.3e-20 CL0268