LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g1193	ATGGGGTTGGGTGCTGATAATGGTAAGGTGGAGTCTTGGGATGTGAGCAAATCAAAGGGAAGGAAGAAAAAGAAGAAAGATGATGGGGTTGTGGAAGAGGAAGAGACTGGGTGTTGGATTAGGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTTAGCGGTACCAGCACTCATTATGCTGAAAGTAAATCAACTAATGATACAAGTAGAGACCAACCAACAGCTCCAGTGGTCTCTTCTACAACCACTAGTAATGCAGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTGCTTCCAGGCTGCGAAAATTCTCATTTAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAGAGTCTTCTTGGTGAAGGTGGTTTTGGTTGTGTATTCAAGGGATGGATCGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACAGTTGCTGTAAAAACCCTCAATCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAGTTTTCTTGGTGATCTAATTCATCCAAACCTTGTTAAACTTATTGGCTACTGCATTGAAGATGATCAAAGGTTGCTAGTATATGAGTTCATGCCTAGGGGAAGCCTGGAAAATCACCTATTTAGGAGATCCCTGCCGCTTCCCTGGTCTATCAGAATGAAAATTGCACTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGGCCAGTAATATATAGGGATTTTAAAACTTCCAATATACTATTAGATGCAGAATACAATGCCAAGCTTTCGGATTTTGGACTTGCGAAAGATGGTCCAGAGGGTGATAAAACCCATGTATCTACTCGTGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTTATGACAGGACATCTTACATCAAGAAGTGACGTGTACAGTTTTGGAGTGGTACTGCTTGAGATGTTGACAGGCAGAAGATCTATGGACAAAAACCGACCCAATGGTGAACATAACCTTGTCGAATGGGCCCGGCCACATCTAGGAGAGAGAAGAAGATTCTATCGATTGATAGATCCTCGGCTAGAAGGTCACTTTTCTATAAAAGGAGCTCAAAAGGCTGCCCAGCTGGCTGCCCACTGTCTTAGTAGAGATCCAAAAGTCAGACCCCTAATGAGTGAAGTTGTAGAAGCTTTAAAGCCTCTGCCAAACTTTAAGGACATGGCAAGCTCATCATATTATTTTCAAACAATGCAAGCCGACCGGTTTGGAGCCAGCCCGAATACTAGAAATGGGCGGACACAAGGGGGATTGCTTGCCAGGAATGGGCAGCAGCAGAGGAGCCTTTCAATACCTAATGGTTCTCATGCATCTCCTTATCACCATCAGTATCCCCAACAATCTCCAAAACCCAACGGCAAAGCATAG	1452	0.4408	MGLGADNGKVESWDVSKSKGRKKKKKDDGVVEEEETGCWIRLRFIGSCISSRSKVDSSVSGTSTHYAESKSTNDTSRDQPTAPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVSFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKVRPLMSEVVEALKPLPNFKDMASSSYYFQTMQADRFGASPNTRNGRTQGGLLARNGQQQRSLSIPNGSHASPYHHQYPQQSPKPNGKA	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g1193	483	ProSitePatterns	Protein kinases ATP-binding region signature.	133	165	IPR017441	GO:0005524
	Glsi09g1193	483	MobiDBLite	consensus disorder prediction	53	99	-	-
	Glsi09g1193	483	FunFam	Probable serine/threonine-protein kinase PBL8	213	428	-	-
	Glsi09g1193	483	MobiDBLite	consensus disorder prediction	53	102	-	-
	Glsi09g1193	483	SUPERFAMILY	Protein kinase-like (PK-like)	113	426	IPR011009	-
	Glsi09g1193	483	Gene3D	Transferase(Phosphotransferase) domain 1	213	427	-	-
	Glsi09g1193	483	MobiDBLite	consensus disorder prediction	432	483	-	-
	Glsi09g1193	483	FunFam	Serine/threonine-protein kinase BIK1	94	212	-	-
	Glsi09g1193	483	PANTHER	OS01G0588500 PROTEIN-RELATED	89	410	-	-
	Glsi09g1193	483	Pfam	Protein tyrosine and serine/threonine kinase	131	407	IPR001245	GO:0004672\|GO:0006468
	Glsi09g1193	483	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	256	268	IPR008271	GO:0004672\|GO:0006468
	Glsi09g1193	483	Gene3D	Phosphorylase Kinase; domain 1	86	212	-	-
	Glsi09g1193	483	ProSiteProfiles	Protein kinase domain profile.	127	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi09g1193	483	CDD	STKc_IRAK	133	410	-	-
	Glsi09g1193	483	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g1193	Glsi-ChrGlsi09	8526484	8530639	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g1193	74	407	Glycoside Hydrolase	AT3G07070	54.438	1.85e-119	354

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi09g1193		PK_Tyr_Ser-Thr	1.5e-45	CL0016