Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi09g1188 | ATGGAATCACAGTTGGGTCTGATAGACCAATCATTCAATAGTTGTTACTCTTACCATGTTCGCGAGGCGCTTGACGAATTGCCTGATAATTTTATTGTTACTGACCCTTCTATCCCTGGCCATCCAATTGTTTTTGCAAGCCCTGGGTTCTTGAAAATGTCAGGTTATTCCAAAGACGAGGTGATTGGCAAGAATGGTAGAATTTTTCAAGGACCAGGGACTTGTAGAAGATCAGTAATAGAAATTCGAGAGGCAATAAGAGAAGAGAGAGCCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGGAGACCCTTTTGGATGTTGTTTCACATGAGCCCTGTATTTAGCAAGTATGATGGCAGGGTGAGTCACTTCGTGGCAGTTCAGGTACCTATATCGAGGAAACGGTGGCGGTCGGGGTGTGGGATTAGGAGAAATGACGTTAATTTGAGCGACGATGGGTCCAAGACGCAGGATTTTTTATATGGATCGTGTCGGAAGGAAGTGTGCTCGGATACTTTGTTGGAACTTGATCGTATTTTATCTCTTCATCATGTGTTAGAACATAATGTTAGAGAATCAGATGGTGAAGAGCCGTATGAGGCAAGTGATGTTCAGAAGAGAAGAGCTGTGACTGCCATGGAGAACATTTTTTCTGTTCTAACCCACTATAGCGAGTTAACTGGCAGATTGGTATGTAGAAAGAGATGCAGCGTTCCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACACTTACCTGACATGCCTATTGTGTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGCCGGAGATGACGTGTTGGGGCGCAATTGTGAATTTTTAAGTGGAGTGAATACTGATACCTCTACTTTATACTTGATAAGGGAAAGCATTAAATCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATTTTCTGCACATATCACCTGTTCGTGATGCTTCTGGCAAGATAGCATACTATGTGGGTGTTCAAATAGAAGAATGCTGTAAGAACAACCAGGAGAGACGGGGTTTTAGCCCTGAGATGAGGCAGCTGAGCGTGGTTGGTGCAGTCAAGGTTGCTGTGAGGAGTTTATCAATGACTGCTGGATCTTCAGACTCATAG | 1209 | 0.4235 | MESQLGLIDQSFNSCYSYHVREALDELPDNFIVTDPSIPGHPIVFASPGFLKMSGYSKDEVIGKNGRIFQGPGTCRRSVIEIREAIREERAIQINLLNYRKDGRPFWMLFHMSPVFSKYDGRVSHFVAVQVPISRKRWRSGCGIRRNDVNLSDDGSKTQDFLYGSCRKEVCSDTLLELDRILSLHHVLEHNVRESDGEEPYEASDVQKRRAVTAMENIFSVLTHYSELTGRLVCRKRCSVPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYAGDDVLGRNCEFLSGVNTDTSTLYLIRESIKSEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKIAYYVGVQIEECCKNNQERRGFSPEMRQLSVVGAVKVAVRSLSMTAGSSDS | 402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi09g1188 | 402 | PANTHER | PROTEIN TWIN LOV 1 | 4 | 392 | - | - | |
| Glsi09g1188 | 402 | FunFam | Protein TWIN LOV 1 isoform D | 30 | 224 | - | - | |
| Glsi09g1188 | 402 | FunFam | protein TWIN LOV 1 | 260 | 397 | - | - | |
| Glsi09g1188 | 402 | ProSiteProfiles | PAS repeat profile. | 273 | 295 | IPR000014 | - | |
| Glsi09g1188 | 402 | Pfam | PAS domain | 260 | 359 | IPR000014 | - | |
| Glsi09g1188 | 402 | Pfam | PAS domain | 39 | 134 | IPR000014 | - | |
| Glsi09g1188 | 402 | ProSiteProfiles | PAS repeat profile. | 16 | 65 | IPR000014 | - | |
| Glsi09g1188 | 402 | Gene3D | PAS domain | 18 | 140 | - | - | |
| Glsi09g1188 | 402 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 28 | 130 | IPR035965 | - | |
| Glsi09g1188 | 402 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 263 | 359 | IPR035965 | - | |
| Glsi09g1188 | 402 | NCBIfam | PAS domain S-box protein | 21 | 129 | IPR000014 | - | |
| Glsi09g1188 | 402 | NCBIfam | PAS domain S-box protein | 273 | 358 | IPR000014 | - | |
| Glsi09g1188 | 402 | CDD | PAS | 269 | 358 | IPR000014 | - | |
| Glsi09g1188 | 402 | SMART | pas_2 | 248 | 321 | IPR000014 | - | |
| Glsi09g1188 | 402 | SMART | pas_2 | 18 | 87 | IPR000014 | - | |
| Glsi09g1188 | 402 | SMART | pac_2 | 323 | 363 | IPR001610 | - | |
| Glsi09g1188 | 402 | SMART | pac_2 | 93 | 136 | IPR001610 | - | |
| Glsi09g1188 | 402 | CDD | PAS | 27 | 133 | IPR000014 | - | |
| Glsi09g1188 | 402 | Gene3D | PAS domain | 260 | 399 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi09g1188 | Glsi-ChrGlsi09 | 8488050 | 8491505 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi09g1188 | 17 | 393 | AGC Kinase Gene Family | AT5G58140 | 31.905 | 4.47e-59 | 204 |