Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1184 ATGAACTGTGGCAACCCAATTAAGCGTACACAAGAATCAATCCACTTTGTAAATGTGGGTCATCCTATAACCCATGCTTTATTTGTGCACATGCGAAATAGTAGGGCTCTTGAAGTGGGCCCTGATCATAAAGTTGAAGGTAAGGCTGGGGTTTTCATATCGATCAAGGACCTTATTGGAACCATCAATTATTGGTTGGCTGTGTCCTCAAGGGCTGTGGTGGCAACGAGCATCACTTACAAGCAACTGTACCCACGTAAAGGACAGGTGGCCGCCACAGTCATCATAAAACTATTGCATACACCGCTATTTGACAGACTGAAGACTCCGAACTCGAACCAACATCCAAAAGTTTCTAAGGCTATGGCGGGTGGGAAGATTTATGGGGGTTCAAATATGACTGTTTTAGTCCAAAACGAAAGGCTTCCTTGCCCCTCTGAGGTTCTTGACTCTCTCTGGGTTCCCAGCTCTGACCCCTCTTTTCAAGGTTCAAAGTCTCTGGTTGATTTTGAGAATGTAAGCGGAAGCACAGTCACAGATAGGCCGTTCTTCCAAGCTCTGGACAAGGAAGAGAACGCTGATGAGGAATACGAGGCTTGCTTTCATCAACCCGGAAAGAAAAGGAGGCTCGCAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTCGAGGTAGAAAACAGGCTCGAACCCGAAAGAAAGGTTCAACTTGCAAAGGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTTCAAAACCGAAGGGCACGATTCAAGACAAAACAACTAGAAAAAGATTATGGCACATTGAAAGCTAGCTATGACAGACTCAAAGGTGACTATGACAATCTTGTTCAGGAGAACGATAAACTAAAAGAAGAGGTGAATTCCCTCAAGGACAAACTGATTTCCAGAGGGAAAGAGGAAGAGGATTATGAGAAGTCACATGATGCTGTCAATTCCTCACATAAAGAGCCTCTGGGATTAATCTCAGATGCAGCTTATGAAAATGGGTCCAAAATGGAACTCCCAATGGCAATCTGCAAACAAGAAGATGCCAATTCAGCTAAAAGCGACGTGTTTGATTCGGACAGCCCCCATTCGTCATTCTTGGAGCCCGCAGATTCCTCCCATGCCTTCGAACCAGACCACTCAGATTTCTCACAGGATGAAGAAGACAACCTAAGCCAGAACCTTCTGTCCTTCCAATGCTTACCAAAGGTTGAAGATGTCCGTTATGACGACCCTCCTCCTGAAAATCCTTGTAACTTTGGGTTCCCAGACGAAGATCAAACCTTCTGTTTTTGGCCTTACTGA 1317 0.4525 MNCGNPIKRTQESIHFVNVGHPITHALFVHMRNSRALEVGPDHKVEGKAGVFISIKDLIGTINYWLAVSSRAVVATSITYKQLYPRKGQVAATVIIKLLHTPLFDRLKTPNSNQHPKVSKAMAGGKIYGGSNMTVLVQNERLPCPSEVLDSLWVPSSDPSFQGSKSLVDFENVSGSTVTDRPFFQALDKEENADEEYEACFHQPGKKRRLASEQVQFLERNFEVENRLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYDNLVQENDKLKEEVNSLKDKLISRGKEEEDYEKSHDAVNSSHKEPLGLISDAAYENGSKMELPMAICKQEDANSAKSDVFDSDSPHSSFLEPADSSHAFEPDHSDFSQDEEDNLSQNLLSFQCLPKVEDVRYDDPPPENPCNFGFPDEDQTFCFWPY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1184 438 Gene3D - 210 255 - -
Glsi09g1184 438 FunFam homeobox-leucine zipper protein ATHB-6-like 209 255 - -
Glsi09g1184 438 SUPERFAMILY Homeodomain-like 197 263 IPR009057 -
Glsi09g1184 438 Gene3D - 256 303 - -
Glsi09g1184 438 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 188 362 IPR045224 GO:0003700
Glsi09g1184 438 Coils Coil 274 301 - -
Glsi09g1184 438 ProSitePatterns 'Homeobox' domain signature. 236 259 IPR017970 GO:0000981|GO:0006355
Glsi09g1184 438 MobiDBLite consensus disorder prediction 357 393 - -
Glsi09g1184 438 MobiDBLite consensus disorder prediction 377 391 - -
Glsi09g1184 438 PRINTS Lambda-repressor HTH signature 232 241 IPR000047 GO:0003677
Glsi09g1184 438 PRINTS Lambda-repressor HTH signature 241 257 IPR000047 GO:0003677
Glsi09g1184 438 ProSiteProfiles 'Homeobox' domain profile. 201 261 IPR001356 GO:0003677
Glsi09g1184 438 Pfam Homeobox associated leucine zipper 261 302 IPR003106 GO:0006355|GO:0043565
Glsi09g1184 438 Pfam Homeodomain 206 259 IPR001356 GO:0003677
Glsi09g1184 438 CDD homeodomain 204 262 IPR001356 GO:0003677
Glsi09g1184 438 SMART HOX_1 203 265 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1184 Glsi-ChrGlsi09 8455153 8465144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1184 163 376 Homeobox Transcription Factor Family AT3G01470 44.595 2.85e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi09g1184 Homeodomain 9.5e-15 CL0123