Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1183 ATGTATTTCAATATAAAGTTAAACACAAGTAAAGTTAGATTTGGTTGCCGTGAAGTTGTTCCCTGCTACTTGAGGAATCTCGCCATGAGTCGCAAGCGAGAGAAACCCTACTTTTCCCGCCACGCCTCGTACTCTATGCCCAAGAGGCGTCGACCTCTTCCCGATCCTACTCCGTCACCCACCGCCGACGCCGATGGCGGAGAGAAGAACACAACAAGGCCAGCGCCACCTTCTGCTGTGGTGGTTATGGGCCTCCCTTTAGACTGCTCTGTTCTCGATCTCAAGTCCCGATTCGAGATCTACGGTCCCATCTCCCGCATCCGCATCGACCGTGATGGGGTTGGCTACATTACTTATCGGAACAAGGAATCTGCCGATGCCGCCATAGCTGCTGCCCTTGACCCTTCTTTCGGAATCACCATCAATTCGAAAAGGGTCCAGGTACTGTGGGCGACCGATCCTCTAGCTATGTGGAGGGAAGGTATAGGTAATAACAAGAATAAAGGGTCCATGTCAAAACTTCTGCGGGCTGAGGTACCTTTGAGCAGACATGGAAGAGGTAATAAACTCGCTTCAGCTGCAGTGAGTCCGAAAAATAGTGAAGGTAGCTCAGGTCTAGACGTGCCTTTCAGGGGCAGAGAAATCGTTGCTTATGATGATATCCTGTAG 669 0.5067 MYFNIKLNTSKVRFGCREVVPCYLRNLAMSRKREKPYFSRHASYSMPKRRRPLPDPTPSPTADADGGEKNTTRPAPPSAVVVMGLPLDCSVLDLKSRFEIYGPISRIRIDRDGVGYITYRNKESADAAIAAALDPSFGITINSKRVQVLWATDPLAMWREGIGNNKNKGSMSKLLRAEVPLSRHGRGNKLASAAVSPKNSEGSSGLDVPFRGREIVAYDDIL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1183 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 153 IPR000504 GO:0003723
Glsi09g1183 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 131 IPR000504 GO:0003723
Glsi09g1183 222 PANTHER GEO13361P1-RELATED 69 181 - -
Glsi09g1183 222 SMART rrm1_1 79 149 IPR000504 GO:0003723
Glsi09g1183 222 SUPERFAMILY RNA-binding domain, RBD 56 163 IPR035979 GO:0003676
Glsi09g1183 222 Gene3D - 61 194 IPR012677 -
Glsi09g1183 222 CDD RRM_SF 80 124 - -
Glsi09g1183 222 MobiDBLite consensus disorder prediction 39 77 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1183 29 222 Homeobox Transcription Factor Family AT1G27050 50.962 7.70e-62 190