Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1178 ATGATCCTTTGCCGTTCTGCTTTGATGTTTTATCACCAAACACCGTCCATTCGGTCCCAAGTATTCTCCCAGTTCAAGCATACATACTCCTTCCCCTGGAGTTCTACTTCCCCTCCTCTGGTTAAAGTCCGCTTCTTTTCGCTTACCCATCCCCGCCAACGGCAATCCAGGGCGTTCGGGAGCGCCGTCGCGGCTGTAGTAGATACAAAGGGGGGAGACACGTTTTTGGCGGAAGAAAACGTTTCGTGGAATTCACTTGGTCTGTCTGATACCATTTCCCGAGCTCTCTCTAACATTGGCCTCGATAGGCCATCTCTGGTTCAGGCTTCTTCTATACCATCTGTCCTTTCTGGAAAGGATGTAGTTATTGCAGCAGAGACTGGGAGTGGTAAAACACACAGTTACCTTGTTCCTCTAATTGATAAGCTACGAGATGCTCATCAGAATTCTGTAAATACAGTCCATAATCAAGAAGTGTCTCTGTCCCATAAGGTTCTGCTCATTCTGTGTCCAAATGTACAACTGTGTGAACAAGTAGTTCGGATGGCTCACAGTCTTTGTGGGGACAATGGTGAACCAATCGTTCATGTAGCTGCAATTTGTGGCAGACAGGGATGGCCAATTCGTGAACCGGATATCATTGTGACGACACCTGTTGCTCTTCTAAATTATGTTGACCAAGACAGACACCGTTGGGAATTTATGCGTGTTGTTAAATATGTGGTGTTCGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGCAATCCGTCTGATAAACTTGCTCCGCTATGATGAAAAACTGTTGTCTCGAACAAAAGAATCAGTAGCAGAGTTGCCAATGAAACTGGAATCTGCCTTGTCATCACTAGATGGTGAAGAGAAACAACCGACTGAAGTCACCACGTCAGAAGATGGAGATGATGATACTGAGATTATGATTGATATTAACAATGAAGCTGATTCTATCAAAAGAAGAGATAGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCCACACTTCCTGTGAATGGAAAGAAAACAGCTGGAGCTATATTAAAACATATGTTTCCTGATTCCATCTGGGTTAGCGGAAATTATCTTCATTGTCACAATCCTAGATTGAAGCAGAGATGGATTGAAGTTACAGTTGATACTCAGGTGGATGAACTCATAAAGGCTGTGAGACAAGGTTTCAGATCTGAAGATTTGGATAATGCTGGTGGCATTTGCCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGCTCAGATCTGGGATTGAATGTTTACGTTATCATAAAAATTGCACCTTGGAGGAGCGAGCAAAGACCTTAGTTGAATTCCAAGAGAGAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATGTCGTGCATGTTATTCAGGCAGATTTTGCTACCTCTGCAGTAGACTTCTTGCATAGGATTGGTCGAACAGCTAGAGCTGGTCAATTTGGACTTGTTACTAGCATGTACACTGAGTCAAACAAGGCGCTTGTTGATGCAGTTCGTCATGCAGGGGAACTCGGTCAACCTGTGGAGACAGCATTTAGCAGGAAAAGAAGTTTCCGTAACAAGCTCAAGAAGAGGGGTACCAATAAAGTAAGAGATTCAGCTATTATTGAAGAGAGCACTATGGCATGA 1737 0.4364 MILCRSALMFYHQTPSIRSQVFSQFKHTYSFPWSSTSPPLVKVRFFSLTHPRQRQSRAFGSAVAAVVDTKGGDTFLAEENVSWNSLGLSDTISRALSNIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRDAHQNSVNTVHNQEVSLSHKVLLILCPNVQLCEQVVRMAHSLCGDNGEPIVHVAAICGRQGWPIREPDIIVTTPVALLNYVDQDRHRWEFMRVVKYVVFDEADMLLCGSFQNKAIRLINLLRYDEKLLSRTKESVAELPMKLESALSSLDGEEKQPTEVTTSEDGDDDTEIMIDINNEADSIKRRDRRRVRKNYERSKQYIFVAATLPVNGKKTAGAILKHMFPDSIWVSGNYLHCHNPRLKQRWIEVTVDTQVDELIKAVRQGFRSEDLDNAGGICRTMVFANTVEAVEAVAKILLRSGIECLRYHKNCTLEERAKTLVEFQERGGVLVCTDAAARGVDIPNVVHVIQADFATSAVDFLHRIGRTARAGQFGLVTSMYTESNKALVDAVRHAGELGQPVETAFSRKRSFRNKLKKRGTNKVRDSAIIEESTMA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1178 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 562 IPR001650 -
Glsi09g1178 578 SMART ultradead3 100 388 IPR014001 -
Glsi09g1178 578 Pfam Helicase conserved C-terminal domain 422 514 IPR001650 -
Glsi09g1178 578 SMART helicmild6 434 514 IPR001650 -
Glsi09g1178 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 526 IPR027417 -
Glsi09g1178 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 550 - -
Glsi09g1178 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Glsi09g1178 578 CDD DEADc 92 272 - -
Glsi09g1178 578 Gene3D - 50 368 IPR027417 -
Glsi09g1178 578 Gene3D - 388 577 IPR027417 -
Glsi09g1178 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 369 IPR014001 -
Glsi09g1178 578 MobiDBLite consensus disorder prediction 291 312 - -
Glsi09g1178 578 Pfam DEAD/DEAH box helicase 107 270 IPR011545 GO:0003676|GO:0005524
Glsi09g1178 578 CDD SF2_C_DEAD 385 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1178 Glsi-ChrGlsi09 8387803 8392155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1178 328 540 Eukaryotic Initiation Factors Gene Family AT5G11200 25.820 1.27e-12 68.2