Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1175 ATGCCGACGGGTAGGTCAAAATCGGAGAAGGAAGATGCTGAGAAGCAGCTCCGGCGGGATCCCTATGAGGTTCTCGGTGTCTCGCGCAGCTCAACTGATCAGGATATTAAAACCGCTTACCGAAAAATGGCGCTCAAATATCATCCTGACAAGAATGCTAACGATCCTAAAGCAGCTGATGTCTTTAAAGAGGTCACCTTTTCATATAATATCTTGTCTAATCCTGAAAAGCGGCGTCAGTATGACTCAGATGGTTTTGAGGCTGTTGAATCAGATAGCCAAGACTTGGAGTTGGATCTTTCAAGTTTAGGTGCCGTGAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTTTCAGCAACTCTTCTGGAAGAGGCACTTACTGGGGCAGTCATCATTCGTCCACTTCCACTTGGGCTGCCTATATCTAAAAGAGTTGAGAAGCAATGTGCCCACTTTTATTCAGTTACAATAACAGAAGAGGAAGCACAGGCTGGATTTGTTTGTCGCGTCCAATCATCAGACAAAAGCAAGTTCAAGTTATTATATTTTGATCAAGAGCAGAATGGTGGATTAAGTCTTGCACTCCAGGAAGACAGTAGAAAAACAGGGAAGGTTACATCTGCTGGAATGTATTTTCTTGGATTTCCTGTTTATCAGTTTGATCAAACCATGAACTCAATAGCTGCTGCTAAGGACCCAGATACATCATTTTTTAGAAAGCTGGATGGGTTCCAGCCATGTGAATTAACAGAATTGAAGGCTGGTACCCATATCTTTGCCGTTTATGGTGACAATTTTTTCAGAAGTGCAAGCTATACGATAGAAGCTCTTTGTGCTGCACCTTTTTGTCAAGAAAAAGACGATCTCAAAAATATAGAAGCTCAAATTTTATCTAAAAGGGCGGAACTACCAAAATTTGAGACTGAATACAAAGAGGTTCTGGCACAGTTTACAGAGATGACAAGCAGATATGCGAAAGAAATGGAAGCGATTGACGAGCTTCTCAAGCAAAAGAGTGAAATACATGCATCATATACTAGTACTCCTCTAAAACGAAGTACAACTAAGAGCAGGAGTAAAAGTTATTCCAAGGAGGCAAAAGATGATGGCCAAGCAAGAGAGAAGAGGCATACAAGAGATCGATCGAAGAAGAAGAGATGGTATAACATTCGCTTGGGAGTTGATAAGAGAAAGGCTTGCTAA 1227 0.4124 MPTGRSKSEKEDAEKQLRRDPYEVLGVSRSSTDQDIKTAYRKMALKYHPDKNANDPKAADVFKEVTFSYNILSNPEKRRQYDSDGFEAVESDSQDLELDLSSLGAVNTMFAALFSKLGVPIKTTVSATLLEEALTGAVIIRPLPLGLPISKRVEKQCAHFYSVTITEEEAQAGFVCRVQSSDKSKFKLLYFDQEQNGGLSLALQEDSRKTGKVTSAGMYFLGFPVYQFDQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHIFAVYGDNFFRSASYTIEALCAAPFCQEKDDLKNIEAQILSKRAELPKFETEYKEVLAQFTEMTSRYAKEMEAIDELLKQKSEIHASYTSTPLKRSTTKSRSKSYSKEAKDDGQAREKRHTRDRSKKKRWYNIRLGVDKRKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1175 408 SMART dnaj_3 19 77 IPR001623 -
Glsi09g1175 408 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Glsi09g1175 408 SUPERFAMILY Chaperone J-domain 19 88 IPR036869 -
Glsi09g1175 408 PRINTS DnaJ domain signature 57 77 IPR001623 -
Glsi09g1175 408 PRINTS DnaJ domain signature 22 40 IPR001623 -
Glsi09g1175 408 PRINTS DnaJ domain signature 40 55 IPR001623 -
Glsi09g1175 408 PRINTS DnaJ domain signature 77 96 IPR001623 -
Glsi09g1175 408 FunFam Chaperone protein dnaJ 16 4 102 - -
Glsi09g1175 408 MobiDBLite consensus disorder prediction 1 22 - -
Glsi09g1175 408 MobiDBLite consensus disorder prediction 354 394 - -
Glsi09g1175 408 MobiDBLite consensus disorder prediction 366 384 - -
Glsi09g1175 408 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 407 - -
Glsi09g1175 408 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Glsi09g1175 408 CDD DnaJ 20 74 IPR001623 -
Glsi09g1175 408 MobiDBLite consensus disorder prediction 1 31 - -
Glsi09g1175 408 Gene3D DnaJ domain 4 102 IPR036869 -
Glsi09g1175 408 Coils Coil 297 317 - -
Glsi09g1175 408 Pfam DnaJ domain 20 82 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1175 Glsi-ChrGlsi09 8362966 8367055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1175 18 83 C2H2 Transcription Factor Family AT1G74250 39.437 5.48e-10 59.3