Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1174 ATGTTAGTTCAGAATTTAGCTTGTCATGAGAGTATTTGTGTAAAATATTTTATTTTCTTTGGGAAGAAAAGGAGGTGGAATTATCCATTTGTTCTGATACAGGTTGATCAATCTGTAATATTTTGCCTGAAGATGAGTACTGCTTTGCAAAGAGCAAGATTTGTTTTGTTAGCGAAATACCTTGAATCTTTTTCACCCTCCCCTATTTTACCAATATGGGAGGGGACTCGGGTTTTGGGTCCTTCCTTTGATGAATTACCGAACTTTTTAAGTAATAGAAGAGGACCTGAGAGCAGAACTGCAGGATTCGACACTATGGAATATAGAGGCCTCAATCTACAGCAGCTAGATGCTGGAGGGCCTGCAAGCCAGGAACAGAGGCAGGATGAAATTTCCTGAACCTTAGAGCATACTATAAAAGTAAGAGAAGCCAAACAACTAATCGGTGCATTCGAGCATTTCTATTTCTACCTCGAAATATCTGTTTTCCCTTACCTAAAAAAGATGGAAAAAGATGTCTGTGATCTTTCTCCAACATGGGACGGAGAAAATGGCCATTCTGTGGAGAAGAGGCTCAGGTTATTTGGGTTTGAGCTGAACCCATCTAAGAATAACGGGGTCAAAGAGTCTATGGAAGGAGATGAAAGTGTGAACTCCTCTAACTCCATTTCATCAGGAGAGAGAACTGACCGGGAGAAGAGCTCAGGAAAAGACCCAGATGAGAGGAAATTCGAGTGCCAATACTGTTTCAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAACGCCCACAAGAAAGAAAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAAGGCTAGTTTAAACTACTACTTACAGCCTTTTCAAAGCAACCCTGGCTTTGCTTACCATGACTCTAGTACCCCTTGGTTCTATGATCCCTCTACCTACTCTGAGTTCTCTTTACATGAAGAATCTCAGATTAGTTTCAATTCAAATGATCAAGAAGCAAATATTTATGGTTTAGATCATCTGAAATCAAAGATGTATTCTCATCCATCCCTGCCTCCCCAGCAAGATACTTGTATCTTCACTTTGTCCCATACAGATAATAGGTCTTTCATCCACAAGCCATGCCACTTCCCTGCTCCAAACCAGAGCCATAGCAAGGCTTTGGATCTTCAACTTGGCCTCAACTTGCAGTCAAATGCAGGAGACTCCCTAAGAAGGACGTAA 1227 0.4148 MLVQNLACHESICVKYFIFFGKKRRWNYPFVLIQVDQSVIFCLKMSTALQRARFVLLAKYLESFSPSPILPIWEGTRVLGPSFDELPNFLSNRRGPESRTAGFDTMEYRGLNLQQLDAGGPASQEQRQDEISXTLEHTIKVREAKQLIGAFEHFYFYLEISVFPYLKKMEKDVCDLSPTWDGENGHSVEKRLRLFGFELNPSKNNGVKESMEGDESVNSSNSISSGERTDREKSSGKDPDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASLNYYLQPFQSNPGFAYHDSSTPWFYDPSTYSEFSLHEESQISFNSNDQEANIYGLDHLKSKMYSHPSLPPQQDTCIFTLSHTDNRSFIHKPCHFPAPNQSHSKALDLQLGLNLQSNAGDSLRRT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1174 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Glsi09g1174 408 Gene3D Classic Zinc Finger 220 293 - -
Glsi09g1174 408 MobiDBLite consensus disorder prediction 203 225 - -
Glsi09g1174 408 FunFam zinc finger protein 5 219 297 - -
Glsi09g1174 408 MobiDBLite consensus disorder prediction 203 239 - -
Glsi09g1174 408 PANTHER ZINC FINGER PROTEIN 5 187 398 IPR044299 GO:0010090
Glsi09g1174 408 SUPERFAMILY beta-beta-alpha zinc fingers 240 271 IPR036236 -
Glsi09g1174 408 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1174 Glsi-ChrGlsi09 8349358 8353582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1174 187 287 C2H2 Transcription Factor Family AT1G68360 44.348 1.11e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1174 None None None