Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1159 ATGAAGAGGTCTAGAGACGATGTTTATATGAGCTCTCAACTCAAACGGTCCATGGTGTCTTCCCGAGGAGAATCTTCGGGGCAACCCCAGATGATGGCTGGAGGTGCTCAGAAACTAACAACAAATGATGCCTTAGCATATCTCAAGGCAGTAAAGGATATATTTCAAGATAAAAGGGAAAAATATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCATAGAGACCTAATTTTGGGATTTAATACCTTCTTGCCAAAAGGATATGAAATCACACTTCCATTGGAGGACGAACAACCTCCACAAAAGAAGCCTGTTGAGTTTGAAGAAGCTATAAATTTTGTGAACAAGATTAAGTCTCGATTTCAAGGTGATGATCATGTCTACAAGTCGTTTTTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTAACGAGGTCTACCAAGAGGTAGCTTCACTTTTCCATGACCACCCAGACCTTCTTGATGAATTTACTCACTTTCTTCCCGATGCTTCAGCAACAGCATCCACACATTATGCTCCTTCTGCTCGGAATTCTTTGCTTCGTGATAGGAGCTCGGCAATGCCAACAGTGAGGCAAATGCAAGCTGAAAGGAGAGAAAGGACTGTAGCTTCACATGGTGATCATGACCTTAGTGTTGATCATCCTGATTCAGATCATGATAGAGTTTTGATGAGGGCAGAAAAGGAGCAGAGGAGGCGTGTTGAGAAGGAAAAGGACCACAGAGAAGAGAGGGACAGGAGAGAACGGGATCGGGAACAGGATGATAGAAATTATGAGAATGACGGTACCCGCAACTTTAATTTGCAACGTTTCCCCCCCAAACGGAAATTTGGTCGTAAAATTGAAGACTCTGGAGCTGAACCATTGCATCAAGGTGGTGATTCTGATGAAAATTTTAGTACGCGCCCTATGTCATCCACTTGTGATGAAAAAAGTTCTGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAATTACGAAATCCCGATGATTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGCATTCCTTGGTAGGTGATTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTAATGAATTTTTGTCTAGATGTGAGAAGAACGATGGATTCCTTGCTGGTGTAATGAATAAAAAGTCCTTTTGGAACGATGGGCATGCACCTAAACCAGCAAAGGTAGAGGACAAGGATAGAGATAGAAATCGAGATCATGATAGGGATGATGGGGTTAAAGAAAGAGATCGTGAACTCCGAGAAAGGGACAAATCTGGTGCCTTCATCAACAAGGATGTTTCAGGTCCTAAGATGCCTCCATTTTCCAGCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTGGACCTTTCTAATTGTGAGCAATGCACTCCCAGCTATCGTCTCCTGCCAAAAAATTATGCATTACCCTCTGCTAGCCAGAGAACTGATCTTGGTGCTGAACTGTTGAATGATCAATGGGTCTCTGTCACTTCAGGAAGTGAAGATTATTCTTTCAAACACATGCGTAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACAACCAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATTATTAAAGGAGATAGTCCAATTCGTATTGAGGAGCACTTGACAGCCCTAAATCGAAGGTGCATTGAACGATTGTACGGTGACCATGGACTTGATGTAATGGAAGTGTTAAGAAAGAATTCACCTCTAGCTTTGCCAGTCATATTAATCCGTTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAATCTCTCGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCTTTACTGGCTGAAATCAAAGAAATTAGTGAGAAGAAACGCAAAGAAGATGACGTTCTTCTTGCAATTGCAGCTGGAAATAGACGGCCTATTATTCCAAATTTGGAATTTGAGTATCCTGATCTAGATATTCATGAAGATCTGTATCAACTTATAAAATATTCTTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTGCCTTCTCGACCCCATGGTGCTGAGGATACAGAAGATGTTGTCAAGGCTAAGCTTAATTCTGTCAAAAGTGGCGCTGTAAGTTTTGCTGACAGTGATGGCAGTCCTGGTGTAGGGACAAATATAATGATTCCAAAACAATCAAATACATGTGAAAATGTGGATGAGAGTATTCCATTAGAACAATCAGACTCTTGCAAAGCATGGCAAACAACCAAGGACAGCAGGGTTAAAGAAGATAACTGTGTTGATGCAGACCATAATGCACGTAAGACTGAAACTTTGGGCTATAGTACACAGCATGATGGAATGCATATTAATGCATCCATGCCTGATGAAGGATCAGCAGTCAGCAAGCAAGACCATTCCAATGAACGGTTAGTGAATGCTAATGCCTCAATGGCTTCTGGAATGGAACAAAATAATGGGAGAACAAACATAGATAATGCATCAGGGCTTACTGCTACTCCATATAGACCTGGTAATGTCGCTGCTGAGGGAGGACTCGATTTACCTTCGTCAGAGGGTGGTGAATCTACAAGACCAGCTACACCCACAAATGGGGCCATCACTGAAGGCAACAAAGTTCACAGATACCGCGAAGAATCTGTTGGACACTTCAGAAGTGAAAGAGAAGAGGGTGAGCTATCTCCAAATGGAGATTTTGAGGATAACTTTGCAGTTTATGGAGATAATGGCTTAACGGCAGTAGGGCATAAAGGAAAGAATGGTAGTGTGAGTATGCAATACCAAAATAGACATGTAGAAGAAGGTTGTGGCGAGGCAGGAGGAGAAAATGATGCTGATGCTGATGACGAAGGTGAAGGAAGTCCTCACAGGTCATTAGAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCAGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAAGAGGATGGGGAACACGATGACCATGATAACAAGGCTGAGAGTGAAGGTGAAGGTGAAGGGATGGCTGATGCCAATGATGTGGAAGGATATGGAACCTCATTGCCATTTTCAGAACGCTTTTTACTAACTGTAAAGCCTCTGGCAAAGCATGTTCCCCCAGTGTTGCATGAGAAAGAAAGGGTTTCACGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCATCGGACATTGTATGAGAGGATACAATCAGCAAAGATCAACTCATCATCTGCTGAAAGGAAGTGGAGGGCTTCAAATGATGCAAACTCTACTGATCTGTATGGCAGATTCATGGCTGCCCTTTATAATCTACTGGATGGTTCTTCTGACAACACGAAATTTGAGGATGACTGCCGTGCTATTATTGGAACTCAATCATATGTCTTGTTCACGTTAGACAAGTTGATATATAAACTTGTTAAACAGCTTCAAGTTGTTGCCACTGATGAGATGGATAACAAGCTTTTGCAACTCCATTCATATGAGAAATCAAGAAAACCTGGAAGATTTGTTGATATAGTTTATCATGAAAATGCACGTGTTCTTCTTCATGATGAGAACATATACCGTATTGAATGTTCATCTACACCGACAAGATTGTATATTCAACTGATGGACTATGGACATGATAAACCTGAAGCAACTGCTGTATCGATGGACCCTAACTTTTCAGCCTATCTGCACAATGACTTCCTCTCTGTTGTTCCTGAAAAAAAGAAGTCAGGGATCTACTTGAAGAGGAATAAACGCAGATATGCCTGTGGTGATGAACTTTCAAGCCTGGCCATGGAAGGACTAGAAGTTACTAATGGTCTGGAGTGTAAGATAGCTTGCAATTCATCTAAGGTTTCGTACGTTTTAGATACTGAAGACTTTTTATTTCGGATGAGAAAGAAAAGGAGACCTTTGCTTCAGAACAGCTCATACCATGAACAGGCAAATCCTTCAAACATTTGTTTGAGCAGAGTACAGCGGTTCCGCAGATTGTTTTCCATTACGTGA 4323 0.409 MKRSRDDVYMSSQLKRSMVSSRGESSGQPQMMAGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSINEVYQEVASLFHDHPDLLDEFTHFLPDASATASTHYAPSARNSLLRDRSSAMPTVRQMQAERRERTVASHGDHDLSVDHPDSDHDRVLMRAEKEQRRRVEKEKDHREERDRRERDREQDDRNYENDGTRNFNLQRFPPKRKFGRKIEDSGAEPLHQGGDSDENFSTRPMSSTCDEKSSVKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELHSLVGDLLGKYPDLMEGFNEFLSRCEKNDGFLAGVMNKKSFWNDGHAPKPAKVEDKDRDRNRDHDRDDGVKERDRELRERDKSGAFINKDVSGPKMPPFSSKDKYLAKPINELDLSNCEQCTPSYRLLPKNYALPSASQRTDLGAELLNDQWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKGDSPIRIEEHLTALNRRCIERLYGDHGLDVMEVLRKNSPLALPVILIRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPIIPNLEFEYPDLDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPHGAEDTEDVVKAKLNSVKSGAVSFADSDGSPGVGTNIMIPKQSNTCENVDESIPLEQSDSCKAWQTTKDSRVKEDNCVDADHNARKTETLGYSTQHDGMHINASMPDEGSAVSKQDHSNERLVNANASMASGMEQNNGRTNIDNASGLTATPYRPGNVAAEGGLDLPSSEGGESTRPATPTNGAITEGNKVHRYREESVGHFRSEREEGELSPNGDFEDNFAVYGDNGLTAVGHKGKNGSVSMQYQNRHVEEGCGEAGGENDADADDEGEGSPHRSLEDSENASENGHVSGSESADGEECSREEHEEDGEHDDHDNKAESEGEGEGMADANDVEGYGTSLPFSERFLLTVKPLAKHVPPVLHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKINSSSAERKWRASNDANSTDLYGRFMAALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQVVATDEMDNKLLQLHSYEKSRKPGRFVDIVYHENARVLLHDENIYRIECSSTPTRLYIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSVVPEKKKSGIYLKRNKRRYACGDELSSLAMEGLEVTNGLECKIACNSSKVSYVLDTEDFLFRMRKKRRPLLQNSSYHEQANPSNICLSRVQRFRRLFSIT 1440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 1052 1066 - -
Glsi09g1159 1440 SMART hdac_interact2seq4b 505 605 IPR013194 -
Glsi09g1159 1440 Coils Coil 254 276 - -
Glsi09g1159 1440 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 324 342 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 1 33 - -
Glsi09g1159 1440 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 956 970 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 431 488 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 436 474 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 1091 1108 - -
Glsi09g1159 1440 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 1037 1119 - -
Glsi09g1159 1440 PANTHER SIN3B-RELATED 37 1299 IPR039774 GO:0003714
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 198 221 - -
Glsi09g1159 1440 SUPERFAMILY PAH2 domain 347 413 IPR036600 GO:0006355
Glsi09g1159 1440 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 198 342 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 305 320 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 915 1003 - -
Glsi09g1159 1440 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Glsi09g1159 1440 FunFam Paired amphipathic helix protein SIN3 341 415 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 915 935 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 11 33 - -
Glsi09g1159 1440 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Glsi09g1159 1440 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Glsi09g1159 1440 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Glsi09g1159 1440 Pfam Paired amphipathic helix repeat 366 410 IPR003822 GO:0006355
Glsi09g1159 1440 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 973 997 - -
Glsi09g1159 1440 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Glsi09g1159 1440 Coils Coil 578 598 - -
Glsi09g1159 1440 Pfam Sin3 family co-repressor 507 598 IPR013194 -
Glsi09g1159 1440 Pfam C-terminal domain of Sin3a protein 1155 1400 IPR031693 -
Glsi09g1159 1440 ProSiteProfiles PAH domain profile. 344 413 IPR003822 GO:0006355
Glsi09g1159 1440 Gene3D Paired amphipathic helix 342 415 IPR036600 GO:0006355
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 872 901 - -
Glsi09g1159 1440 MobiDBLite consensus disorder prediction 223 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1159 Glsi-ChrGlsi09 8237551 8247100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1159 28 142 WRKY Transcription Factor Family AT4G12020 51.282 6.72e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi09g1159 Sin3a_C 2.3e-58 No_clan