Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1154 ATGGATGCGACCAACCGGGACTCTGTCATGAAATACTTTCATAAACGACGTCGTGTTTATAGTCAAAAGATTCAACTGGTGGTCAAAAAGCTGCTTATTTCCTTTTCCCCCTTCTCCCTCTTTCTGTCTCTGTCTCCATCCCTTCTACCCGTGCTACCGTTTCCGCTCTATGAACTCCAAAAAGTATTCATTCTTCGCATAAACCAGAAACCCATTTCGTTTATCATGAATGTCATCTTTCTCTTCGCCTCAATCTTGCTCCTTTATTCATCTCTTTCCGTTTCTATCGAGGATGATGTGGTTTGCCTCCAAGGTGTAAAGAACTCATTTTCCGACCCAAATGGAAAGCTCAGCTCTTGGACCTTCACCAACACTTCAGTGGCCTCAATCTGCCAGCTCGTTGGCGTCTCTTGCTGGAACGAGAAGGAGACCCGCCTCATCAGCCTCCAGCTTCGTGATATGCAGCTCGCTGGAAAGCTCCCTGAGTCGCTAAAGTATTGCCGGAGCCTCCAGACCCTGGAAATCTCCGGTAACGCTCTGTCCGGTTCGATCCCTTCCTTTATCTGTACTTGGTTGCCTTATTTGGTGACCTTAGATCTCTCCGGGAACCAAATCACCGGTTCAATCCCACCTGAGATTGTGAATTGTAAGTTCTTGAATACCCTTCTTTTGAATGATAACCAATTATCGGGTTCGATCCCTTATGAGTTGGGTCGGCTTGATCGATTGAAGAGGCTCTCTGTTGCCAATAATGATCTTTCGGGTTCTATACCACCGGATTTGTCCAAATTTGATGAAGCTGATTTTGATGGGAACCGTGGGTTGTGTGGGAAGCCTGTTGGGTCCAAGTGTGGTGGGTTGAGTGGTAAAAGTCTTGGGATTATCATTGTTGCTGGTGTTGTTGGAGCAATGGGATCTCTGGTGCTGGGTTTTGCCCTCTGGTGGTGGTTCTTCCTCAGGGTCAGCAAGATAAAGAGAGGGTATGGTGGAGCTGGTGGTGATAAGCACGTGAGCGATTGGATTGAGTTGTTGAAGTCACACAAGCTTGCTCAGGTGTCTTTGTTCCAGAAACCCATTGTGAAGGTTAGATTAGCTGATTTGTTGGTGGCTACGAACAGTTTTCATCCAGAAAATATTGTGATCTCTACGAGAACAGGGGTTTCTTATAAGGCAGTTTTGCGTGATGGGTCGGCGCTTGCCATAAAGAGGCTTAATGCTTGTAAACTTAGTGAGAAGCAATTTCGATCAGAGATGAATAGGTTGGGGCAGCTCAGAAATCCCAATTTGGTACCTTTATTGGGTTTCTGTATGGTGGAAGAAGAGAAACTTTTGGTGTACAAGCACATGTTCAATGGCACCTTGTATTCTCAATTGCATGGACATGGTAATGCTAATAGTCAGTACAGTTTTCTGGACTGGCCAACGAGGCTGAGGATTGGGGTAGGTGCAGCCAGAGGACTTGCTTGGCTTCACCACGCTTGGCAACCTCCATATATTCACCAGAACATTAGCTCAAATATAATTCTTCTTGATTATGATTTTGAAGCCCGAATAACAGATTTTGGATTGGCCAGGCTTGTGGTAACTCGTGATCCTAATGATAGCTCCTTTGTCAATGGTGATCTGGGTGAGGTTGGTTATGTTGCTCCTGAGTACTCAAGCACCATGGTTGCTTCCCTGAAAGGGGATGTTTATGGTTTTGGAGTAGTTCTCTTGGAATTGGTAACAGGGCAGAAGCCAGTGGAAGTAGATAGTGGAGGAGAAGGATTCAAAGGGAATTTAGTGGATTGGGTCAATTGGTTGTCAATCACAGGCCGAAAAAAGGATGCAATAGATAAGGCATTACTGGGTGAAAGTCATGAATATGATGAGGAAATTATGCAGTTCATGCAGGTTGCCTTTTCTTGTGTTGTTTCTCGGCCTAAAGATAGACCTTCCATGTCCCAAGTTTTTTCCTCACTGAAGAGCATGGCTGATAAACATGGTTTCTCAGATCAGTACGATGAATTTCCAGTTGTTTGTGGCAAACAGGATTCTGACTATAAGAATTAG 2052 0.4493 MDATNRDSVMKYFHKRRRVYSQKIQLVVKKLLISFSPFSLFLSLSPSLLPVLPFPLYELQKVFILRINQKPISFIMNVIFLFASILLLYSSLSVSIEDDVVCLQGVKNSFSDPNGKLSSWTFTNTSVASICQLVGVSCWNEKETRLISLQLRDMQLAGKLPESLKYCRSLQTLEISGNALSGSIPSFICTWLPYLVTLDLSGNQITGSIPPEIVNCKFLNTLLLNDNQLSGSIPYELGRLDRLKRLSVANNDLSGSIPPDLSKFDEADFDGNRGLCGKPVGSKCGGLSGKSLGIIIVAGVVGAMGSLVLGFALWWWFFLRVSKIKRGYGGAGGDKHVSDWIELLKSHKLAQVSLFQKPIVKVRLADLLVATNSFHPENIVISTRTGVSYKAVLRDGSALAIKRLNACKLSEKQFRSEMNRLGQLRNPNLVPLLGFCMVEEEKLLVYKHMFNGTLYSQLHGHGNANSQYSFLDWPTRLRIGVGAARGLAWLHHAWQPPYIHQNISSNIILLDYDFEARITDFGLARLVVTRDPNDSSFVNGDLGEVGYVAPEYSSTMVASLKGDVYGFGVVLLELVTGQKPVEVDSGGEGFKGNLVDWVNWLSITGRKKDAIDKALLGESHEYDEEIMQFMQVAFSCVVSRPKDRPSMSQVFSSLKSMADKHGFSDQYDEFPVVCGKQDSDYKN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1154 683 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 96 285 - -
Glsi09g1154 683 SUPERFAMILY Protein kinase-like (PK-like) 352 654 IPR011009 -
Glsi09g1154 683 Gene3D Transferase(Phosphotransferase) domain 1 449 676 - -
Glsi09g1154 683 Pfam Leucine rich repeat N-terminal domain 97 139 IPR013210 -
Glsi09g1154 683 SUPERFAMILY L domain-like 96 272 - -
Glsi09g1154 683 Gene3D Phosphorylase Kinase; domain 1 334 448 - -
Glsi09g1154 683 Pfam Protein tyrosine and serine/threonine kinase 397 653 IPR001245 GO:0004672|GO:0006468
Glsi09g1154 683 Gene3D Ribonuclease Inhibitor 97 286 IPR032675 -
Glsi09g1154 683 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 449 676 - -
Glsi09g1154 683 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 335 448 - -
Glsi09g1154 683 CDD STKc_IRAK 382 657 - -
Glsi09g1154 683 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 143 656 - -
Glsi09g1154 683 ProSiteProfiles Protein kinase domain profile. 374 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1154 Glsi-ChrGlsi09 8205609 8209217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1154 97 679 Receptor kinase-like Gene Family AT1G27190 69.178 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Glsi09g1154 PK_Tyr_Ser-Thr 8.5e-30 CL0016