Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1146 ATGGATCCGGCTGCTATGATGAACGAGGGTTCCTTTGCGAATGGGAATGCTAACACGCCGTCATATAACTTGGCGGAGATCTGGCAGTTCCCGATGAATGGCGGTGCGGGTCTCGGGGAGTCTGGAGGCGGGTTGGGTTTGAGGAGGCGGCAGTTCGGGCATAATTTGGGGCAGTTCGGTGATTTTACGTCAGGTTCGATTCGGGATGTCCCGGGCAATGATCCGATCAGTTCGGAGCAGAGAGCGAATGGGGTCAATAGGAAGAGGCGCGATTCGGAGGATGAATCGGCCAAGGGCGTCTCCACCGGCAACGGCAATGGCGTGAATGATGGCGACGGAAAACGGCTTAGAACATCAGTGAACAGGAATGAGAGCGGTGATACTAAAGCTGAAGCAGAACTCAGTTCGGGAAAGCCTGCGGAGCAAAGTACTCAGCCAGCTCCTGAACCTCCTAAGCAAGATTACATACATGTACGAGCGAGAAGGGGTCAAGCTACTGACAGCCACAGTCTAGCAGAAAGGGCTAGGAGGGAAAAGATAAGCGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTACATCCAATCACTACAGCGCCAAGTTGAGTTCCTGTCAATGAAGATTGAAGCTGTAAATACAAGAATGGACCCTGGCATTGATGTGTTTCCTCCTAAAGATTTTGATCAACAAACATTTGACACTGCTGGGATGGCATTTGGTCCTCAAGCGATGCGAGAATTTAGCCGGGGATCATCACCAGAGTGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAGAACAACATAG 858 0.4953 MDPAAMMNEGSFANGNANTPSYNLAEIWQFPMNGGAGLGESGGGLGLRRRQFGHNLGQFGDFTSGSIRDVPGNDPISSEQRANGVNRKRRDSEDESAKGVSTGNGNGVNDGDGKRLRTSVNRNESGDTKAEAELSSGKPAEQSTQPAPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKIEAVNTRMDPGIDVFPPKDFDQQTFDTAGMAFGPQAMREFSRGSSPEWLHMQVGGGFERTT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1146 285 MobiDBLite consensus disorder prediction 57 152 - -
Glsi09g1146 285 Gene3D - 161 234 IPR036638 GO:0046983
Glsi09g1146 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 86 255 IPR024097 GO:0006355
Glsi09g1146 285 SMART finulus 170 220 IPR011598 GO:0046983
Glsi09g1146 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 233 IPR036638 GO:0046983
Glsi09g1146 285 CDD bHLH_AtBPE_like 154 239 - -
Glsi09g1146 285 MobiDBLite consensus disorder prediction 83 97 - -
Glsi09g1146 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Glsi09g1146 285 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Glsi09g1146 285 Coils Coil 211 231 - -
Glsi09g1146 285 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Glsi09g1146 285 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1146 Glsi-ChrGlsi09 8123072 8125322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1146 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.704 1.96e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g1146 HLH 2.3e-08 No_clan