Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1117 ATGAAGTGTTGGAGGCTAAGAAAAGTGGAAAACTATCTTCGTCTTGTACCTTTTGGAGCTATAAGTAAGATTGCTGCTTTACCAGCTGGAGGACCGCACGAGCATTCTCTTTCTCAACTCTCATCAGTTGGTGGCTATCTCCACCCTAAATCGTCGTCTAGTCTTCATCTATCTGCAGCTGCCGGCAGCAAGTTCACCTCATCGGCTCTCGAATTCAGGAGTTACTGTTTGTTTTCTTATCTGCCAAACCGCCATCGTTGGCGTACCTGTTCACCGCCGCCGTCTATTCTGTACTTCAGCTATTATCCGCCATCGTTATCACCAACGACGACTTTGCTTCATCGTTTTCGGTCTCCAGCAGCTCTCAGAACCAAGCTTCTTGACCAAAAAAGAAAAGAATCAATCCGTAAGGGGAACCAAACACTCTTGATCTTTGGGATGGCATGTCCCAAGAGAAATGACTGTCAAATGCCTAGTTTACTTTCGATTTCTTTCCACAGTATTTTAAAGTTTCTCTTGGAGGCAGCCAAAATGTCGAGAAAGGGTTTGATGGAACAAGACCTCAGTAAACTGGATGTGACAAAATTGCATCCACTCTCTCCTGAAGTCATCTCTCGGCAGGCTACCATTAATATTGGTACCATAGGCCATGTGGCACATGGTAAGTCAACAGTTGTGAAGGCAATATCGGGTGTTCAGACTGTTCGTTTTAAAAATGAGTTGGAGCGTAATATCACAATCAAGCTAGGCTATGCAAATGCAAAGATATATAAGTGTGAAGACGAACGGTGTCCTAGGCCCATGTGCTACAAGGCATATGGAAGCGGAAAAGAAGATAGTCCTATGTGTGATGTGCCAGGGTTTGAAAACTGCAGGATGAAATTGCTGAGACATGTTTCTTTTGTGGATTGCCCGGGTCATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTGCTGCTCATAGCTGCTAATGAGAGCTGCCCACAACCACAAACCTCTGAGCATCTAGCTGCTGTGGAAATTATGCGTCTACAACACATAATAATTCTTCAAAATAAGGTTGATCTGATTCAAGAAAATGTGGCTATCAATCAGCATGAAGCAATTAAGAAGTTTATCCAAGGAACAGTTGCTGATGATGCACCTGTAGTACCAATTTCGGCTCAGTTGAAGTATAATATTGATGTTGTGTGCGAGTATATTGTGAAGAGGATCCCAATTCCTGAAAGGAACTTTGTTTCTCCACCTAATATGATTGTAATTCGGTCATTCGATGTCAATAAACCTGGGTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTAAGGGGTGTTTTGAAAGTAAACCAATTCATTGAAGTTCGACCAGGGATAGTTGTTAAAGACGAGAGTGGGAATATCAGATGCACACCCATATACTCTAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTACCAGGAGGTCTGATTGGTGTTGGCACAACCATGGATCCCACTTTGACCCGTGCAGACAGGTTGGTGGGACAAGTTCTTGGGGAGGTTGGATCACTGCCTGAGGTTTATGTAGAACTTGAGGTAAATTTCTTCTTACTTCGACGGCTGCTTGGAGTCCGGACAAAAGGAACTGAGAGACAGGGAAAGGTATCTAAGCTGGCTAAAGCAGAGATCCTAATGTTGAACATAGGATCAATGTCAAGTGGGGCCAGAGTTCTTGCGGTTAAGAATGATTTGGCTAAGTTGCAACTCACTTCCCCTGTGTGCACTAGCAAGGGGGAGAAGATTGCATTAAGTCGACGTGTTGAGAAGCATTGGCGTCTAATTGGGTGGGGTCAAATCCAGGCAGGAACCACTCTTGATGTCCCTTCTGCACCCTTTCTGAATTAA 1932 0.4374 MKCWRLRKVENYLRLVPFGAISKIAALPAGGPHEHSLSQLSSVGGYLHPKSSSSLHLSAAAGSKFTSSALEFRSYCLFSYLPNRHRWRTCSPPPSILYFSYYPPSLSPTTTLLHRFRSPAALRTKLLDQKRKESIRKGNQTLLIFGMACPKRNDCQMPSLLSISFHSILKFLLEAAKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIKKFIQGTVADDAPVVPISAQLKYNIDVVCEYIVKRIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVYVELEVNFFLLRRLLGVRTKGTERQGKVSKLAKAEILMLNIGSMSSGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPSAPFLN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1117 643 Gene3D Translation factors 419 533 - -
Glsi09g1117 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 419 IPR027417 -
Glsi09g1117 643 FunFam Eukaryotic translation initiation factor 2 subunit gamma 534 633 - -
Glsi09g1117 643 CDD eIF2_gamma_III 534 628 IPR015256 -
Glsi09g1117 643 Pfam Elongation factor Tu domain 2 445 527 IPR004161 GO:0005525
Glsi09g1117 643 Pfam Initiation factor eIF2 gamma, C terminal 539 628 IPR015256 -
Glsi09g1117 643 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 532 629 IPR009001 -
Glsi09g1117 643 FunFam Eukaryotic translation initiation factor 2 subunit gamma 418 533 - -
Glsi09g1117 643 Gene3D - 207 417 IPR027417 -
Glsi09g1117 643 FunFam Eukaryotic translation initiation factor 2 subunit gamma 207 417 - -
Glsi09g1117 643 Gene3D Translation factors 534 633 - -
Glsi09g1117 643 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 178 636 - -
Glsi09g1117 643 SUPERFAMILY Translation proteins 417 531 IPR009000 -
Glsi09g1117 643 Pfam Elongation factor Tu GTP binding domain 209 413 IPR000795 GO:0003924|GO:0005525
Glsi09g1117 643 CDD eIF2_gamma_II 418 531 IPR044127 GO:0000049
Glsi09g1117 643 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 207 416 IPR000795 GO:0003924|GO:0005525
Glsi09g1117 643 CDD eIF2_gamma 210 417 IPR044128 GO:0005525
Glsi09g1117 643 PRINTS GTP-binding elongation factor signature 211 224 IPR000795 GO:0003924|GO:0005525
Glsi09g1117 643 PRINTS GTP-binding elongation factor signature 316 327 IPR000795 GO:0003924|GO:0005525
Glsi09g1117 643 PRINTS GTP-binding elongation factor signature 300 310 IPR000795 GO:0003924|GO:0005525
Glsi09g1117 643 PRINTS GTP-binding elongation factor signature 354 363 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1117 Glsi-ChrGlsi09 7791747 7803126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1117 178 641 Eukaryotic Initiation Factors Gene Family AT1G04170 89.892 0.0 875