Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi09g1116 | ATGGGAGCAGGGGACTATTACAGGATACTCAAGGTGAATCGTAATGCAACCGATGAGGAGCTGAAGAAGGCCTACAAGAGATTGGCCATGAAATGGCACCCAGACAAGAATCATCAACACCCACCTGGGAAAGAAGATGCTGAGGCTAAATTCAAGCAGATATCTGAGGCTTACGATGTCCTCAGCGACCCCAAGAAGCGTCAGATCTACGATTTCTATGGCCACTATCCCCTCAATTCTGATCGGGTTAACAAGGAAGATGGTAATAATGGGGATATTGGGAATCAGAAAGACAAGAAGGCGGGGACGATGGAGAGCAAATTGGCGTTCAGCCTCGAGGAACTTTTCAAAGGTTGCAGAAGGAAGTTGAAAATCTTAAGGAATATTCCTGATGAATTTGGCAAGTTAAATACTGTTGAAGAAGTCTTGAAGATAGATATTAAACCTGGTTGGAAGAAGGGCACAAAAATTACTTTTCCTGAGAAAGGCAATCAACTGGAACCAGGAAAAGCTCCGGCTGATCTAATTTTTGTGATTGAAGAGAAACCTCATGCCATTTTCAAGAGGAACGGAAATGATTTGGTAGTCACCCAGAAGATATTACTTGTAGAGGCTCTCATCGGAAAGACTCTCAACTTGACAACCTTGGATGGAAGAGACCTCACCATTCAAGTGACGGATATTGTGAAGCCAGGCTCTGAGCTGGTGGTCCCAAATGAAGGGATGCCCATTTCAAAGGAACCAGGCAAGAAAGGGGACCTCAGAATTAAGTTTGATGTTATGTTTCCTTCACGGCTGACCACACAACAGAAGTATGAGCTGAAAAGGATTCTGAGTGAAGCTGTTAGTTAA | 852 | 0.439 | MGAGDYYRILKVNRNATDEELKKAYKRLAMKWHPDKNHQHPPGKEDAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSDRVNKEDGNNGDIGNQKDKKAGTMESKLAFSLEELFKGCRRKLKILRNIPDEFGKLNTVEEVLKIDIKPGWKKGTKITFPEKGNQLEPGKAPADLIFVIEEKPHAIFKRNGNDLVVTQKILLVEALIGKTLNLTTLDGRDLTIQVTDIVKPGSELVVPNEGMPISKEPGKKGDLRIKFDVMFPSRLTTQQKYELKRILSEAVS | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi09g1116 | 283 | FunFam | DNAJ heat shock family protein | 183 | 278 | - | - | |
| Glsi09g1116 | 283 | SUPERFAMILY | Chaperone J-domain | 4 | 79 | IPR036869 | - | |
| Glsi09g1116 | 283 | SMART | dnaj_3 | 4 | 66 | IPR001623 | - | |
| Glsi09g1116 | 283 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 106 | 184 | IPR008971 | GO:0006457|GO:0051082 | |
| Glsi09g1116 | 283 | ProSiteProfiles | dnaJ domain profile. | 5 | 74 | IPR001623 | - | |
| Glsi09g1116 | 283 | MobiDBLite | consensus disorder prediction | 81 | 100 | - | - | |
| Glsi09g1116 | 283 | CDD | DnaJ | 5 | 63 | IPR001623 | - | |
| Glsi09g1116 | 283 | ProSitePatterns | Nt-dnaJ domain signature. | 51 | 70 | IPR018253 | - | |
| Glsi09g1116 | 283 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 278 | - | - | |
| Glsi09g1116 | 283 | Gene3D | DnaJ domain | 2 | 94 | IPR036869 | - | |
| Glsi09g1116 | 283 | FunFam | Dnaj homolog subfamily b member | 100 | 182 | - | - | |
| Glsi09g1116 | 283 | CDD | DnaJ_C | 111 | 266 | - | - | |
| Glsi09g1116 | 283 | Gene3D | - | 184 | 264 | - | - | |
| Glsi09g1116 | 283 | FunFam | DnaJ-like subfamily B member 13 | 2 | 101 | - | - | |
| Glsi09g1116 | 283 | Gene3D | - | 102 | 182 | - | - | |
| Glsi09g1116 | 283 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 187 | 271 | IPR008971 | GO:0006457|GO:0051082 | |
| Glsi09g1116 | 283 | PRINTS | DnaJ domain signature | 7 | 25 | IPR001623 | - | |
| Glsi09g1116 | 283 | PRINTS | DnaJ domain signature | 25 | 40 | IPR001623 | - | |
| Glsi09g1116 | 283 | PRINTS | DnaJ domain signature | 46 | 66 | IPR001623 | - | |
| Glsi09g1116 | 283 | PRINTS | DnaJ domain signature | 66 | 85 | IPR001623 | - | |
| Glsi09g1116 | 283 | Pfam | DnaJ domain | 5 | 71 | IPR001623 | - | |
| Glsi09g1116 | 283 | Pfam | DnaJ C terminal domain | 105 | 263 | IPR002939 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi09g1116 | Glsi-ChrGlsi09 | 7789837 | 7791541 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi09g1116 | 6 | 81 | C2H2 Transcription Factor Family | AT1G74250 | 36.364 | 1.72e-09 | 56.6 |