Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1085 ATGCCATATTCTACAATGTCTTGGGTTCACTCTCAAATCCGGCGGGACAATGGTGCTATGACCCGCTACCCTACTGTTTACCCGTCGTCGTCTTCGTTGGTTTACAGTTCTAACTACCAGAAGCAATTAAGCCCACCTCCGGCTTCTTCATCTGGCAATAAAATCAGCCCAGCAGTTCTTTTTATCATAGTTGTTCTAGCTATTGTATTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTGATAAAGCATAGGTCGTCTTCGTCGATTTCTCAGTCCAATAGATACCCAGATATGTCTGAATCCGATGCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCACGATTCCGGACTAGATCAGGCTTTTATAGATGCTCTCCCCGTCTTCCTTTATAAAGAGATAATTGGCTTGAAAGAGCCATTTGATTGTGCCGTTTGCCTTTGTGAATTCTCAGAACAAGACAAGCTGAGATTGCTGCCCATGTGTAACCATGCTTTTCACATTGCCTGCATAGACACATGGTTATTGTCTAATTCAACTTGTCCGCTCTGTAGAGGGACTCTTTATGCATCGGGATTTGCCATTGAAAACCCGGTCTTTGACTTTGAAGATCCAAGGGAAGAAGACGGGGTTTCAGGCAGTGGTGGAAGTGGGGCTACTTCGGTTAACAAACCTGCAGAAAATCATATTATGAGTGGGAAAAGGGTGTTTTCCGTCAGACTTGGAAAATTTAGAAGCTCAAATAATAGAGAGGGAATAGACAGAGGTGAAGGGGAGAGCAGCAGCAGTAATTTTGATGTAAGGAGATGCTATTCAATGGGGTCTTTCCAGTATGTGGTTGCTGATTCAGATTTGCGGGTAGCTTTATGCCCCAATAGAGGTGATGGGGGTAGTGGCAGTATGAGACAATTGAAAGGGCGAGCAACTCAAAATGGGAATCCTTCCACTGATGCAGACTTTGAGGGCAAAAAACTTAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAAGAAGGATAAATTACCATGTCCGTCGGAAACTCATATGGGAAATTCTACTGTCACTGCAAATTTGCCATGGATGAATAGGACGCGAGGTACATGA 1137 0.4362 MPYSTMSWVHSQIRRDNGAMTRYPTVYPSSSSLVYSSNYQKQLSPPPASSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFSEQDKLRLLPMCNHAFHIACIDTWLLSNSTCPLCRGTLYASGFAIENPVFDFEDPREEDGVSGSGGSGATSVNKPAENHIMSGKRVFSVRLGKFRSSNNREGIDRGEGESSSSNFDVRRCYSMGSFQYVVADSDLRVALCPNRGDGGSGSMRQLKGRATQNGNPSTDADFEGKKLNIARKGESFSVSKIWLWSKKDKLPCPSETHMGNSTVTANLPWMNRTRGT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1085 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Glsi09g1085 378 MobiDBLite consensus disorder prediction 307 321 - -
Glsi09g1085 378 Pfam Ring finger domain 146 189 IPR001841 -
Glsi09g1085 378 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Glsi09g1085 378 SUPERFAMILY RING/U-box 126 194 - -
Glsi09g1085 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 344 - -
Glsi09g1085 378 MobiDBLite consensus disorder prediction 300 323 - -
Glsi09g1085 378 MobiDBLite consensus disorder prediction 210 229 - -
Glsi09g1085 378 SMART ring_2 147 188 IPR001841 -
Glsi09g1085 378 FunFam RING-H2 finger protein ATL46 109 194 - -
Glsi09g1085 378 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1085 Glsi-ChrGlsi09 7580441 7581577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1085 49 351 C3H Transcription Factor Family AT2G18650 42.342 1.13e-58 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1085 09 7580441 7581577 Glsi09g1085 09 7580441 7581577 ECH