Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1080 ATGGCATCAAGATCATATGCTAATCTTCTTGACTTAGCTGGTGGAGACTTATTGGATATTCCTGACACCCCAAGAACTCTTCCAAGGGTTGTTACAGCTCCGGGAATTATTTCTGACCTGGATCGTCATGGCTGTAATGATGGGGATTCAGATGTTAGCTCTTCTGGGTCTCGAGAGCAGAAAATTATAGTGGCAAACATGCTGCCATTGCAGGCTAAAAGGGATGCACAAACTGCTAAATGGTGCTTCAGTTTGGATGAGGATTCAATTTTGTTACAATTAAAAGATGGTTTTTCTTCTGATACTGAGGTGATCTATGTGGGGTCCCTTAAGGCTGAAATAGAACCTGGTGAGCAGGAAGAAGTTGCTAAAAAATTAATGGAGGACTTTAATTGTGTGCCTACTTATCTACCCCATGATCTCCAGAAAAAGTTTTATCTTGGCTTTTGTAAGCAGCAGCTGTGGCCTCTCTTTCATTACATGCTACCTGTGTGCCCAGATCATGGTGACCGCTTTGACCGCTTGCTTTGGCAGGCTTATATTTCTGCAAACAAAATATTCGCAGACAAGGTTATGGAAATAATTAATCCTGATGATGACTTTGTTTGGGTTCATGACTATCACTTGATGGTGTTGCCTACTTTTCTGAGGAAGCGATATAATCGAGTTAAACTTGGATTCTTCCTTCACAGCCCTTTCCCTTCATCTGAAATTTACCGAACTCTGCCAGTACGTGATGAAATTTTGAGGGGATTGTTGAATTCTGACTTAATTGGTTTTCATACATTTGATTATGCTCGCCATTTCCTCTCTTGCTGCAGTAGAATGCTGGGTCTAGACTATGAATCTAAGCGGGGACATATAGGACTTGATTATTTTGGCCGCACTATATTTATCAAAATTTTGCCTGTAGGCATTCACATGGGTAGACTTGAATCTGTATTAAATCTTCCTTCTACACCTGCCAAAATAAAAGAAATCCAGGAAGAGTTTAAGGGTAGGAAAGTGATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATCAGTCTGAAACTTCTAGCTGTAGAGCAGCTGCTGCTGCAGCATCCAGATTTGCAGGGCAAAATTGTCCTAGTTCAAATTGTGAATCCTGCGAGGGGTTCTGGGAAGGATGTTCAGGAAGCGAAGAAGGAAACATATTTAATTGCCCAGAGGATCAATGATGCTTATGGTTCACATCATTATCAGCCTGTTATTCTCATTGATCGTCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTCGCAGAATGTTGCATTGTCAATGCTGTGAGGGATGGTATGAACCTAGTGCCCTACAAATATGTTGGCTGCAGACAAGGAACTTCAAAACTGGATGAAGCACTGGGTAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTTTCTGAGTTCATTGGTTGTTCACCTTCCTTAAGTGGAGCAATCAGGGTTAACCCCTGGGATATAGATGCTGTTGCCGAAGCGCTGAATTTGGCCATTGTAATGCATAATTCAGAGAAGCAATTGCGGCATGAGAAACACTACCGTTATGTCAGCTCTCATGATGTGGCATATTGGGCACGCAGCTTCATGCTGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATTGGTCTGGGCCTAGGGTTCAGAGTTGTTTCTCTTTCTCCTGGTTTTAGGAAGTTGTCCATTGACCACATTGTTTCAGCATACAAAAGGACCAATAGGAGGGCCATATTTCTTGATTATGATGGTACCGTGGTGCCACAATCTTCTATAAATAAAATCCCCAGCCCTGAAGTCATATCGGTCCTAAATACTCTTTGTAATGATCCCAAGAACACTGTGTTCATTGTTAGTGGGAGGGGAAGAGATTCTCTTAGTGATTGGTTTGCTTCGTGCAAAATGCTGGGACTTGCTGCTGAACATGGGTACTTCTTAAGGTGGAATGGAGACTCCAAATGGGAAACCAGTCACTTGTCTGCTGACCTTGATTGGAAAAATATTGTGGAACCTGTAATGAGATTATATACAGAGGCAACTGATGGGTCTAATATTGAAATCAAGGAAAGTGCATTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTGAACCACCTTGAAAGTGTGCTTTCTAATGAACCAGCAGTCGTTAAGAGGGGCCAGCAAATTGTTGAAGTAAAGCCACAGGGTATAAGCAAGGGTTTGGTAGCTGAAAAGGTTCTTCTAACTCTGGTCAGTGGTGGGAATCCACCAGATTTTGTAATGTGCGTTGGAGATGATAAGTCTGATGAAGACATGTTTGAGGGCATACTAAGAACAGTCTCTTCTCCATCATTACCAGTAGCAACAGAGATCTTTGCTTGCACTGTTGGCCGGAAGCCTAGCAAGGCCAAGTATTATCTTGATGATGCTGTTGATGTTGTAAAATTGCTTCAGGGCCTTGGTACTGCATCGAATCCAAAGCCTAGGCATCTGGCCCAATTCCAGGTTTCTTTTGAGAGCACAGCTTGA 2586 0.4254 MASRSYANLLDLAGGDLLDIPDTPRTLPRVVTAPGIISDLDRHGCNDGDSDVSSSGSREQKIIVANMLPLQAKRDAQTAKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKAEIEPGEQEEVAKKLMEDFNCVPTYLPHDLQKKFYLGFCKQQLWPLFHYMLPVCPDHGDRFDRLLWQAYISANKIFADKVMEIINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLPSTPAKIKEIQEEFKGRKVILGVDDMDIFKGISLKLLAVEQLLLQHPDLQGKIVLVQIVNPARGSGKDVQEAKKETYLIAQRINDAYGSHHYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYVGCRQGTSKLDEALGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAIVMHNSEKQLRHEKHYRYVSSHDVAYWARSFMLDLERACKDHYTKRCWGIGLGLGFRVVSLSPGFRKLSIDHIVSAYKRTNRRAIFLDYDGTVVPQSSINKIPSPEVISVLNTLCNDPKNTVFIVSGRGRDSLSDWFASCKMLGLAAEHGYFLRWNGDSKWETSHLSADLDWKNIVEPVMRLYTEATDGSNIEIKESALVWHHQDADPDFGSCQAKELLNHLESVLSNEPAVVKRGQQIVEVKPQGISKGLVAEKVLLTLVSGGNPPDFVMCVGDDKSDEDMFEGILRTVSSPSLPVATEIFACTVGRKPSKAKYYLDDAVDVVKLLQGLGTASNPKPRHLAQFQVSFESTA 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1080 861 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Glsi09g1080 861 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Glsi09g1080 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Glsi09g1080 861 Gene3D Glycogen Phosphorylase B; 315 530 - -
Glsi09g1080 861 CDD GT20_TPS 62 545 IPR001830 GO:0003824|GO:0005992
Glsi09g1080 861 NCBIfam trehalose-phosphatase 590 838 IPR003337 GO:0003824|GO:0005992
Glsi09g1080 861 Gene3D Glycogen Phosphorylase B; 50 314 - -
Glsi09g1080 861 NCBIfam HAD-IIB family hydrolase 593 793 IPR006379 -
Glsi09g1080 861 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 852 - -
Glsi09g1080 861 CDD HAD_TPP 593 834 - -
Glsi09g1080 861 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Glsi09g1080 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 549 - -
Glsi09g1080 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 840 IPR001830 GO:0003824|GO:0005992
Glsi09g1080 861 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Glsi09g1080 861 Gene3D - 721 851 IPR023214 -
Glsi09g1080 861 Gene3D - 591 708 IPR023214 -
Glsi09g1080 861 SUPERFAMILY HAD-like 592 839 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1080 Glsi-ChrGlsi09 7548087 7550883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1080 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.335 0.0 1363