Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1077 ATGTCTCGGGTTTATGTTGGGAATTTGGATCCTCGGGTCACTGAGAGGGATCTTGAAGATGAATTTCGTATGTACGGTGTTCTCCGGAGTGTCTGGGTTGCTCGAAGGCCACCAGGATATGCTTTTCTCGAATTTGATGATAGGAGGGATGCACTTGATGCAATTCATGCTTTGGATGGCAAAAATGGCTGGCGTGTAGAACTTTCTCATAATTCCAAGGGTGGTGGAGGACGAGGTGGACATGGCCGTGGAGGTGATGACTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTAGGGAGTGTCGCTTGCGCATTGGTTCACGAGGCCTGGGTAGTGGACGACGACGAAGCCCTAGTCCTTATCGACGCCGTAGAAGTCCAAGTTATGGGTATGGTGGCCGCAGGAGTTATAGCCCAATTGGAAGAAGATCTCCAAGACGACGCAGCATAACACCACCTCGACGTGGTCGCAGCTACAGCAGGTCCCCTCCATACCGTCATTCTCGTCGTGACTCTCCTTATGCTAATGGAGATTAA 543 0.5028 MSRVYVGNLDPRVTERDLEDEFRMYGVLRSVWVARRPPGYAFLEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGHGRGGDDLKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRRSPSYGYGGRRSYSPIGRRSPRRRSITPPRRGRSYSRSPPYRHSRRDSPYANGD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1077 180 SUPERFAMILY Retrovirus zinc finger-like domains 79 106 IPR036875 GO:0003676|GO:0008270
Glsi09g1077 180 CDD RRM_SRSF3_like 3 71 - -
Glsi09g1077 180 MobiDBLite consensus disorder prediction 166 180 - -
Glsi09g1077 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Glsi09g1077 180 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Glsi09g1077 180 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 169 - -
Glsi09g1077 180 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Glsi09g1077 180 Gene3D - 2 69 IPR012677 -
Glsi09g1077 180 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Glsi09g1077 180 SMART rrm1_1 3 69 IPR000504 GO:0003723
Glsi09g1077 180 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 77 151 - -
Glsi09g1077 180 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Glsi09g1077 180 MobiDBLite consensus disorder prediction 110 180 - -
Glsi09g1077 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Glsi09g1077 180 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Glsi09g1077 180 Gene3D - 78 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1077 Glsi-ChrGlsi09 7510801 7512521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1077 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 1.46e-06 45.8