Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1072 ATGGTGCTAAATTTAAACAGGTCGGATCGCCGGATATTTTCTTTCCCGGCGGTTCATCCCTGCGAGGATATTGCTCCCTCCACCCTTCTCGCTTCTTCGATTAGTCTCTCTCACGGCATTTGCCATTTCAAACCCAAATTCTTCCCCTGCAATAAGCGAAATGCAGGGAAAGCCATTCGACTAATCGAGGTTCTTCAAGTTTTCCTCCAAGAAATCCGAGACCAGCAATGGAGTCTTCCAGATTCGGCGGTCTTGAGCCTGTCGGAGCTCCATTTGACCTTTCAGAAGCTTCATTTCCTGTTGGAAGATCTTGCTCGTGACGGTGCTCGCCTGTGGATGTTAATGGAGTCTGAGCGGGTCGCAACCCAATTCCGGGTCTTGTCCAGATCAGTTTCCACTGCTCTGGATGTTTTCCCTCTGTGCTCTGTTTGCATTTCGGTGGAAGCTAAAGAGCAGGTCGAGTTGCTAATTATGAAGAAAGCTCGAACGGCGAGGTTCGAAGTTGAGCCCGATGATATGCGAGCTATGAAGAGTGTTATATCGATATTGAATCGCTTTGAGAATAGGATTACTCCAAGTGAGTGTGATCTGGAATGGGTTCTTGGTCACATTGGGGTCCGGAGATGGAGTGAGTGTAATAAAGAAGTTAAGTTTTTGGATGCAGAAATTGGGTTTGAGCGCTTGAGTGAGAAAAAGGATCCAAAGGTAGCATTTTTAAGTAGTTTAATGGGGTTCATGAGCTACTGCAGATGCGTGGTGATTGTCAAAGTTGATATCCAAAAATCTAATGGCATAGAAAGCAGCATTGACAGTGAGATCCTAAGTTGCCTCAACCCAGATGATTTTCGCTGTCCAATCTCTCTCGAGTTCATGATCGACCCAGTGACGATAGAGACAGGTCATACATATGATCGCTCTTCAATTCTCAGATGGTTCAAAAGTGGAAATCCCATTTGTCCCAAGACGGGTAAAAGGCTTGGAAGCATTGATTTGGTCCCCAATTTGGTGCTTCGGAGGTTGATTCAACAATATTGTTCTGCAAACAACATTCCTATCGCCGATCTAGATTGTCGGAATCGCGACATTACCAAGACGGTGCAGCCTGGAAGTTTGGTAGCAGAGGAAGTCATGAAAATGCTGGCCATATTTCTAAGTGGAAAGCTTGAAAATGGATCAGGGGGAGAGAGGAACAAAGCTGCTTATGAGATCCGCCTTCTTTCCAAATCAAGCATTTTTAATAGATCTTGTTTGGTGGAAGCTGGCGCAGTTCCTCGTTTAACTATGATAGTTGAGGATTGTGGCTTAGAACTAATTGTGGATGTCCTAAAGAAGGGAAAAAAGATAGAAGCTCGCCAGCATGCTGCTGCTACATTATTCTATCTTGCTTCAAAGGAAGAGTACAGAAAACTGATCGGGGAACACCCAGAAGCGATTCCATCTTTGATCAATCTAATCAAAGATGGTTCTGATCGAGGCAAAAAGAATGGCTTGGTTGCAATGTTTGGCCTGCTCATGCACCCTGAAAATCACAAGAGGGTGCTTGCATCTGGGGCAATTCCTTTGCTGGTTAACATCTTAAAATCATGCGATAGATCACAAGATCTTGTCACAGATTCACTAGCAATTTTAGCAACTCTAGCAGATAAAAGAGATGGAACAATGTCAATCCTTCGCTTTGGAGCTTTATTGCATATAGCAGTTGAAGTTTTGAATTCTTCAACCTCAAGGTTCGGGAAGGAGCACTGCGTGTCTTTATTGCTTGCTCTGTCAATAAATGGAGGAGTAGATGTGGTTGCTGTTTTAGTGAAGAGCCCTTCTCTCATGGGATCCTTATATTCCCTACTCAGTGAAGGCACATCCCGAGCAAGCAAGAAGGCCAGTGCTCTCATCAGGGTCCTCCATGATTTTTACGAAAGGAGGTCCTCTGGCTTCAAGATTTCAGTTCTTCCACAAGAACAGTTTATTCACGTTTGGTAA 1977 0.4441 MVLNLNRSDRRIFSFPAVHPCEDIAPSTLLASSISLSHGICHFKPKFFPCNKRNAGKAIRLIEVLQVFLQEIRDQQWSLPDSAVLSLSELHLTFQKLHFLLEDLARDGARLWMLMESERVATQFRVLSRSVSTALDVFPLCSVCISVEAKEQVELLIMKKARTARFEVEPDDMRAMKSVISILNRFENRITPSECDLEWVLGHIGVRRWSECNKEVKFLDAEIGFERLSEKKDPKVAFLSSLMGFMSYCRCVVIVKVDIQKSNGIESSIDSEILSCLNPDDFRCPISLEFMIDPVTIETGHTYDRSSILRWFKSGNPICPKTGKRLGSIDLVPNLVLRRLIQQYCSANNIPIADLDCRNRDITKTVQPGSLVAEEVMKMLAIFLSGKLENGSGGERNKAAYEIRLLSKSSIFNRSCLVEAGAVPRLTMIVEDCGLELIVDVLKKGKKIEARQHAAATLFYLASKEEYRKLIGEHPEAIPSLINLIKDGSDRGKKNGLVAMFGLLMHPENHKRVLASGAIPLLVNILKSCDRSQDLVTDSLAILATLADKRDGTMSILRFGALLHIAVEVLNSSTSRFGKEHCVSLLLALSINGGVDVVAVLVKSPSLMGSLYSLLSEGTSRASKKASALIRVLHDFYERRSSGFKISVLPQEQFIHVW 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1072 658 SUPERFAMILY ARM repeat 387 633 IPR016024 -
Glsi09g1072 658 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Glsi09g1072 658 Pfam U-box domain 279 349 IPR003613 GO:0004842|GO:0016567
Glsi09g1072 658 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Glsi09g1072 658 SUPERFAMILY RING/U-box 278 352 - -
Glsi09g1072 658 SMART arm_5 506 548 IPR000225 GO:0005515
Glsi09g1072 658 SMART arm_5 422 463 IPR000225 GO:0005515
Glsi09g1072 658 Gene3D - 364 642 IPR011989 -
Glsi09g1072 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 561 IPR000225 GO:0005515
Glsi09g1072 658 PANTHER U BOX DOMAIN-CONTAINING 67 426 - -
Glsi09g1072 658 CDD RING-Ubox_PUB 279 331 IPR045210 -
Glsi09g1072 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Glsi09g1072 658 FunFam RING-type E3 ubiquitin transferase 278 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1072 Glsi-ChrGlsi09 7481493 7483557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1072 1 658 U-box Gene Family AT1G60190 45.194 0.0 548