Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1064 ATGTCCGCCTCTCCCACACTCTCCTCCACAACTTCCCACCTCAGAAACTTTCCCCCTCTCCCTTCCACTACTCCACTTTCTCCCAGATTTTCCCTCACTTTTCGGGAAAAGAAAAAACCTATCGTACCCCCAAGCATCTTTGTTCAGAAACGGCACCCACTTTCGGCGAGGTCTGCAAGAGTTTTGGTAAAATCACAGGCTACAGCTCCTGCTTCTTCTGAAGCTGTGAAAGTGACAGCCATACCTTCTGAAATGAAGGCCTGGGTCTATGGGGAATATGGGGGCGTAGATGTTTTGAAGCCGGACTCAAATGTTGCCGTGCCTGACGTTAAGGAGGACCAGGTGCTCGTCAAGGTTGTTGCTGCAGCTCTTAACCCCGTTGATGCCAAGAGAAGGCAGGGCAAGTTCAAGGCCACTGATTCTCCCCTTCCGACTGTTCCAGGGTATGATATTGCTGGTGTGGTGGTAAAGGTTGGAAATCAAGTACAGGATTTCAAAGTGGGCGACGAAGTATATGGGGATGTAAATGAGAAAGCACTAGAAGGGCCTAAGCAGTTTGGGTCTCTGGCAGAGTACACTGCTGTTGAAGCAAAATTGCTGGCCCCAAAACCTAAGAATTTGGATTTTGTTGAGGCTGCTGGTCTTCCTCTTGCCATTGAGACTGCCTATGAGGGTTTGGAGAAGACTGGATTTTCTCCCGGTAAATCTATTCTTGTTCTTAATGGTTCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAGCAAGTTTTTGGAGCTTCAAAAGTTGCTGCCACTTCGAGTACTAGAAATCTTGAGCTGTTGAAGAGCTTGGGTGCTGATTTGGCTATTGACTACACAAAGGAGAATTTTGAAGATTTGCCCGAAAAATTTGACGTAGTTTATGATGCCATTGGGCAATGTGAGAGGGCAGTGAAGGCAGTGAAAGAAGGTGGGAGTGTGGTGGCACTGACAGGTGCAGTGACACCCCCTGGCTTCAGATTTGTGGTGACTTCCGATGGAGAAGTTCTGAAGAAGTTGAATCCTTATTTAGAGAGTGGAAAGGTGAAGCCAGTTGTTGACCCACAAGGTCCATTCCCCTTTGCCAAGCTTGCAGAAGCCTTCTCTTACCTTGAAACTAACCGAGCTACCGGAAAGATTGTCATACATCCAATCCCATGA 1182 0.4763 MSASPTLSSTTSHLRNFPPLPSTTPLSPRFSLTFREKKKPIVPPSIFVQKRHPLSARSARVLVKSQATAPASSEAVKVTAIPSEMKAWVYGEYGGVDVLKPDSNVAVPDVKEDQVLVKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDIAGVVVKVGNQVQDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEAKLLAPKPKNLDFVEAAGLPLAIETAYEGLEKTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASKVAATSSTRNLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCERAVKAVKEGGSVVALTGAVTPPGFRFVVTSDGEVLKKLNPYLESGKVKPVVDPQGPFPFAKLAEAFSYLETNRATGKIVIHPIP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1064 393 CDD MDR_like_2 85 389 - -
Glsi09g1064 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 207 330 IPR036291 -
Glsi09g1064 393 Gene3D - 226 340 - -
Glsi09g1064 393 SUPERFAMILY GroES-like 82 239 IPR011032 -
Glsi09g1064 393 MobiDBLite consensus disorder prediction 1 22 - -
Glsi09g1064 393 SMART PKS_ER_names_mod 94 389 IPR020843 GO:0016491
Glsi09g1064 393 Gene3D - 92 389 - -
Glsi09g1064 393 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 76 393 IPR044626 GO:0016628
Glsi09g1064 393 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 234 255 IPR002364 GO:0008270|GO:0016491
Glsi09g1064 393 Pfam Zinc-binding dehydrogenase 278 389 - -
Glsi09g1064 393 Pfam Alcohol dehydrogenase GroES-like domain 113 175 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1064 Glsi-ChrGlsi09 7421489 7424466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1064 109 281 Monolignol Biosynthesis Gene Families AT4G39330 26.633 8.44e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1064 09 7421489 7424466 Glsi09g1064 09 7421489 7424466 ECH