Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1063 ATGACGAAGGCTGCCAATCAGTACAAGAAGGGGCTATGGACGGAGGAGGAAGACAGGATTTTGGTAGAATACATCAGGGTTAATGGAAGAAGGCACTGGAACCGCATTTCAAAAGTGACAGGGTTAATGAGGAATGGGAAGAGCTGCAGGTTAAGGTGGCTGAACTACCTAAGCCCAAACGTCAAACATGGCAGTTTCTCTGAGGAAGAAGACGATCTCATCATTAGACTTCATAATCTCCTTGGAAACAGGTGGTCTCTGATAGCAGGAAGGGTGCCAGGAAGAACTGACAACCAAGTTAAGAACCACTGGAACACTCATTTGTGCAAGAAGCTTGGTATAAGGAAGCAAACTGCAAAAGTTAGGGTACCCTCAAAACCAAGGGTTTCGGCAATGGAAGAAGGGACTCAAAAAGTGCACGTGAGTCTGGATTCTAGGCCCCAGCTCCCTCTCAATAGCGATGATAAACAGAAAGAAACTGAAACAACAAAAGGATACGAGAGCTGTTTGAATGATTCTGTGGCAACCGTTGATGAAGAACCATATTGGCCCGGAGGAAGAGAAGAAGAGCACTTTGACCAAACTTTTTTATTTTCTGGTGACGATTATCATAAGTTTGTTCTAGATAGTCCTGAGTTAATGGAATTCTTTGATGGGTTTGACATAATCTAG 672 0.4375 MTKAANQYKKGLWTEEEDRILVEYIRVNGRRHWNRISKVTGLMRNGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGIRKQTAKVRVPSKPRVSAMEEGTQKVHVSLDSRPQLPLNSDDKQKETETTKGYESCLNDSVATVDEEPYWPGGREEEHFDQTFLFSGDDYHKFVLDSPELMEFFDGFDII 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1063 223 Gene3D - 65 139 - -
Glsi09g1063 223 SMART sant 62 110 IPR001005 -
Glsi09g1063 223 SMART sant 9 59 IPR001005 -
Glsi09g1063 223 CDD SANT 65 108 IPR001005 -
Glsi09g1063 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 159 - -
Glsi09g1063 223 FunFam MYB-related transcription factor 9 62 - -
Glsi09g1063 223 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Glsi09g1063 223 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Glsi09g1063 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 57 IPR017930 -
Glsi09g1063 223 CDD SANT 13 57 IPR001005 -
Glsi09g1063 223 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Glsi09g1063 223 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Glsi09g1063 223 Gene3D - 2 63 - -
Glsi09g1063 223 MobiDBLite consensus disorder prediction 151 165 - -
Glsi09g1063 223 FunFam Transcription factor WER 64 134 - -
Glsi09g1063 223 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Glsi09g1063 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Glsi09g1063 223 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1063 Glsi-ChrGlsi09 7412771 7414676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1063 6 220 MYB Transcription Factor Family AT5G40330 46.522 1.18e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g1063 Myb_DNA-binding 7.4e-13 CL0123