Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1040 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCGGATCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTAGCAGACTACAACATCCAGAAGGAGTCAACCCTTCATCTTGTGCTTCGTCTTCGTGGTGGAGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTGCTCCAATTTTACAAGGTTGATGATTCAGGTAAGGTTCAGCGGCTCAGGAAGGAGTGCCCCAATGCTGAGTGTGGGGCTGGAACTTTCATGGCCAACCACTTCGATCGCCATTACTGCGGCAAGTGTGGGCTGACTTATGTCTACCAGAAGGGTGGTGATTAA 468 0.5192 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKGGD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1040 155 SUPERFAMILY Zn-binding ribosomal proteins 100 152 IPR011332 GO:0006412
Glsi09g1040 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Glsi09g1040 155 PANTHER UBIQUITIN 1 89 - -
Glsi09g1040 155 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Glsi09g1040 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Glsi09g1040 155 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Glsi09g1040 155 CDD Ubl_ubiquitin 1 76 - -
Glsi09g1040 155 Gene3D - 81 155 IPR038582 -
Glsi09g1040 155 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Glsi09g1040 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Glsi09g1040 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Glsi09g1040 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Glsi09g1040 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Glsi09g1040 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Glsi09g1040 155 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Glsi09g1040 155 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1040 Glsi-ChrGlsi09 7286053 7286520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1040 1 154 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.104 6.09e-91 259