Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1030 ATGGAGGAAATCTACGGAGTGCCGTTGATGGCGGAGTTCTCCGACAAGGCCTTGATGACGCCGGAGAACCTGATCTTCCCCGCTGATTACCAGAGCTTTCTCATGTCTTCCGGCGGTTTCCGTGATCGGAATCCGATGTCTGGATCCGACGAGTTGCTCTCCGCCATCACCGAAGCCGAGCCGACGTCCACCGTTCCCGAAATTCAGGGCCAAGAGGACGCCTCCGCTATGATCAAAGCCAAAATCGCTTCTCATCCTTACTACCCTCGTCTCCTCCAAGCTTACATAGATTGCCAGAAGGTAGGAGCGCCTCCGGAAATAGCCTCTTTGTTAGATGAAATCCGGCGAGAAAACGACCTTTGTAAGCGGGACGTTATTTCCACGTGCTTTGGAGCCGATCCTGAGCTCGACGAGTTCATGGAAACCTACTGCGATATGCTGGTGAAGTATAAATCTGATCTTGTGCGGCCTTTTGATGAAGCAACTTCTTTCCTCAACAAGATCGAAATGCAGCTTAGCCATCTCTGCTCTGGTGGTTCCGTTCCTAGCCTTTCCGATGATGGGGGTGTGTCTTCAGAAGATTTTAGTACAGGAGATGGTGATGATGCTCAGGAGAGTCAATCGCGGGATGAAGATCGAGAGCTTAAGGATAGGCTTTTACATAGGTTTGGGAGTCACATTAGTACTTTGAAATTGAAGTTCTCTAAGAAGAAAAAGAAGGGTAAGCTACCAAAAGAAGCCCGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGACAAGATTGCACTGGCGAAGTCAACGGGATTAGACCAAAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGAACATGCAGTTTTCTGTGATGGATAACCTGACCGGACGGTTCTTCACTGATGAATGA 954 0.4811 MEEIYGVPLMAEFSDKALMTPENLIFPADYQSFLMSSGGFRDRNPMSGSDELLSAITEAEPTSTVPEIQGQEDASAMIKAKIASHPYYPRLLQAYIDCQKVGAPPEIASLLDEIRRENDLCKRDVISTCFGADPELDEFMETYCDMLVKYKSDLVRPFDEATSFLNKIEMQLSHLCSGGSVPSLSDDGGVSSEDFSTGDGDDAQESQSRDEDRELKDRLLHRFGSHISTLKLKFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENMQFSVMDNLTGRFFTDE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1030 317 MobiDBLite consensus disorder prediction 183 212 - -
Glsi09g1030 317 Gene3D - 233 305 - -
Glsi09g1030 317 SMART HOX_1 236 301 IPR001356 GO:0003677
Glsi09g1030 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 304 - -
Glsi09g1030 317 SUPERFAMILY Homeodomain-like 235 308 IPR009057 -
Glsi09g1030 317 FunFam Homeobox protein knotted-1-like 2 239 301 - -
Glsi09g1030 317 Pfam KNOX2 domain 130 176 IPR005541 GO:0003677|GO:0005634
Glsi09g1030 317 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Glsi09g1030 317 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Glsi09g1030 317 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Glsi09g1030 317 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Glsi09g1030 317 SMART ELK_2 214 235 IPR005539 GO:0003677
Glsi09g1030 317 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Glsi09g1030 317 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Glsi09g1030 317 CDD homeodomain 246 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1030 Glsi-ChrGlsi09 7212826 7220186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1030 1 317 Homeobox Transcription Factor Family AT1G23380 65.046 7.03e-144 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi09g1030 KNOX2 1.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0884 05 59089000 59100775 Glsi09g1030 09 7212826 7220186 CCT