Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1027 ATGTCTTGTGCCTCCTTCGTGCTTCTCTTCCTTTGGTACTCTGCCGTTCCTGCTCTTTCTGATCCAAGAGCCACAGAGGCAGCCCTGATGTGCACTAATAGAACTGCTTCAATGCCTGAACGTCGGATTTTCATAGCAAATTTTATAGATGCCTTAGACGCTTTGACCGCTTTAATTGGCAGACAAAGATATGCAGCTTCTATTAATGGGACTAAAAATGCCACTGTTTATGCTTTTGGGGAGTGCATGAAAGATCTTTCTCAACCGGATTGCAATGTCTGCTTTGCCCAATGCAAGACCCAAGTCCTCAGGTGCCTGCCATTTCAAAGAGGCATTAGCGGTGGTAGGCTCTTCTTTGATGGGTGTTACCTCAGGTATGACGATTACAACTTCTTCAATGAAAGTCTCAGTGATCAAGACAGAACTGTTTGCGGAACCAAAGACTTTGGTGACAATCAGGCTGTTTATAAAGCTACTGCTATAGAGCTAGTGAGAAATTTAAGTGTGGAAGCACCAAAGAATGATGGGTTTTTTGTAAGTTCTGTGAATCGAGGTAACGTAACTGTTTATGGGTTGGCTCAGTGCTGGGAGTTTGTCAACGGGAGTGCATGTGAGAGCTGTTTGGCAGAAGCTGTTACTAGGATTTGTTCTTGTACTCCAAAAGAAGAAGGAAGGGCATTGAATGCTGGATGTTACCTTAGGTATTCGACCCAGAAGTTCTATAACAATTCAACCAATGATGCGCCTATAGGAAATCAAGGACGCCACCATTTTGTTACAACTCTGGCTGCGACAAGTGCCGGCGTGGCTCTTCTGCTGGTTGTTGCAACAGTTATTTTCTTTGTGAGGAAGAGGGAACTGAGGAGGAAGAGAGAAAGAAGACAGTTTGGTGCACTTTTAGACACAATGAACAAGTCCAAGCTCAATACGCCATATGAAGTTCTTGAAAGGGCCACAAATTACTTCAGTGGCTGCAATAAACTAGGACAAGGGGGATCAGGTTCAGTTTATAAAGGAGTTCTGCCTGATGGAAACACTGTAGCCATAAAAAGGCTTAGCTTTCACACAACACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGATAAGTGGCATTCATCACAAAAATCTTGTAAAGCTTTTAGGGTGCAGTATTACAGGACCCGAAAGCCTTCTTGTTTACGAATACGTACCAAACCAAAGCCTCCACGATCACCTTTCTGCTAGACAAAATTCTCAACCGTTGACATGGGAAAGCAGGCATAAAATCATAATGGGAACTGCAGAGGGCTTGGCCTATCTTCATGAGGAATCACAAGTGAGAATCATTCATAGAGATATAAAACTAAGCAACATTCTGCTTGACGAGGACTTCACGTCCAAGATAGCTGATTTTGGACTTGCTAGACTATTTCCAGAAGATAAGAGTCACATTAGCACTGCCATTGCTGGCACATTGGGTTATATGGCTCCAGAGTATGTAGTTCATGGGAAGTTGACTGAGAAGGCAGATGTTTACGGTTTTGGGGTTGTGGTCGTTGAGATTGTATCTGGAAAAAGAAACAGTTCCTTTGTGCTACATTCATCCTCCATCCTACAAATGGTTTGGAATCTTCATAAATCAGGTAGGCTCCGAGACATAGTTGATCCGGCCCTCGAGGGTAATTACCCAGCTGAGGAAGCGTGCCGGCTGCTTCAGATAGGTTTGCTATGTGCACAAGCCTCAGCAGAGCTGCGACCATCAATGTCAGCAGTTGTGAGAATGATTACCTACAATCAGGAGATTCCTCAGCCAACACAACCCCCATTTCTTATTTCAAGTAGTGCAGAATGCAGCAAATCTGAATATAATTTTCAGGCTGGGTCCTGTACTCATTCATCAGGGGACAGGACGACTGAAAGTCTAATTGAGCCTAGATGA 1923 0.4373 MSCASFVLLFLWYSAVPALSDPRATEAALMCTNRTASMPERRIFIANFIDALDALTALIGRQRYAASINGTKNATVYAFGECMKDLSQPDCNVCFAQCKTQVLRCLPFQRGISGGRLFFDGCYLRYDDYNFFNESLSDQDRTVCGTKDFGDNQAVYKATAIELVRNLSVEAPKNDGFFVSSVNRGNVTVYGLAQCWEFVNGSACESCLAEAVTRICSCTPKEEGRALNAGCYLRYSTQKFYNNSTNDAPIGNQGRHHFVTTLAATSAGVALLLVVATVIFFVRKRELRRKRERRQFGALLDTMNKSKLNTPYEVLERATNYFSGCNKLGQGGSGSVYKGVLPDGNTVAIKRLSFHTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHLSARQNSQPLTWESRHKIIMGTAEGLAYLHEESQVRIIHRDIKLSNILLDEDFTSKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVHGKLTEKADVYGFGVVVVEIVSGKRNSSFVLHSSSILQMVWNLHKSGRLRDIVDPALEGNYPAEEACRLLQIGLLCAQASAELRPSMSAVVRMITYNQEIPQPTQPPFLISSSAECSKSEYNFQAGSCTHSSGDRTTESLIEPR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1027 640 FunFam Cysteine-rich receptor-like protein kinase 2 24 131 - -
Glsi09g1027 640 Pfam Protein kinase domain 326 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1027 640 FunFam Cysteine-rich receptor-like protein kinase 2 398 598 - -
Glsi09g1027 640 CDD STKc_IRAK 328 591 - -
Glsi09g1027 640 FunFam Putative DUF26-domain receptor-like protein kinase family protein 282 397 - -
Glsi09g1027 640 ProSiteProfiles Gnk2-homologous domain profile. 25 131 IPR002902 -
Glsi09g1027 640 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Glsi09g1027 640 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Glsi09g1027 640 Gene3D Transferase(Phosphotransferase) domain 1 398 600 - -
Glsi09g1027 640 FunFam Cysteine-rich receptor-like protein kinase 3 140 240 - -
Glsi09g1027 640 Pfam Salt stress response/antifungal 148 237 IPR002902 -
Glsi09g1027 640 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Glsi09g1027 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Glsi09g1027 640 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Glsi09g1027 640 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 77 619 - -
Glsi09g1027 640 Gene3D - 139 240 IPR038408 -
Glsi09g1027 640 Gene3D - 25 131 IPR038408 -
Glsi09g1027 640 SUPERFAMILY Protein kinase-like (PK-like) 309 607 IPR011009 -
Glsi09g1027 640 ProSiteProfiles Protein kinase domain profile. 322 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1027 640 SMART serkin_6 322 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1027 Glsi-ChrGlsi09 7199168 7201773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1027 17 487 Receptor kinase-like Gene Family AT1G70530 62.288 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi09g1027 Pkinase 1.6e-47 CL0016