Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1008 ATGGCTCTACTTGTTGGCGGTATTCAACCTCAGTTACTGTCTTTCATTCGTCATGAGCGAAGAAAACCTTTTATCAGACATTCTCACAGACGCTTCCATTTCGCCGCTAATACTAAAATTCGAATTGTTCTTTCCACTTCTCCTTTTAATCCCAGACTCATTCTGGTGAGCCCTCTAAAATCAGCGTCCATAACTGGGGTTTCTGTTCAGGACAATCCAGAAGCTTTAAGTGAAGACCATAGCAGGGAAGAAGATCATGTTGACTTTCTGGAGAGGCTTAGGAGATGGTTCAGTTTCCTTCCTTCGATTTTACCGGGCGGAAGCTGGTGGGACTTTTCCGAAGACGTAGAGGTTGAGGGTTTAGCTAAACCGGTTACCGTGTGGCGCGCACTTGCCAAAATGTGGCAACTTGTTGCTCAAGACCGATGGGTTATTTTAGCTGCATTCTCTGCTCTGATTCTTGCAGCGGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCTATCTTCTCCGCACAGGGTGCGGAAATTACAGTGTTCCGTCGGAATGTGCGTCTCTTGGTTCTATTCTGTATAACTTCGGGAATTTGCAGTGGGATACGAGGCTGCTGCTTTGGAATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCCTCCCTTCTCCTTCAGGATATATCATTTTTTGACACTGAAACAGTTGGTGATCTTACAAGTAGGCTTGGGGCAGATTGTCAACAAGTTTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATACTCTTCAGGGAACAGGTGCATTAATCTATTTGTTAGCTTTGTCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTATCAGCAGTTTTGCTACTTTACGGAAGGTACCAGAAAAAGGCTGCAAAGTTGATCCAAGAAGTCACTGCTTCTGCAAATGAAGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTCCGTGTTTATGGAACAGAAAAAGAAGAACTTGGAAGGTACAAATGTTGGCTGGGAAACTTAGCTGATATAAACTTGCGACAAAGTGCTTCATATGGATTTTGGAATTTCAGCTTCAACACTCTTTATCATTCAACTCAGGTTATCGCCGTGCTGTTTGGAGGAATGTCTATTCTAGCAGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTTATTTTTTCAACGTGGTGGGTGGGAGACAGTATATCTTCTTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCATTTGATGGATTTATCACCTAGTAGGCAACTCAATGCAAAAGGAGTAAAGTTGCAGAGGTTAATGGGGCATATTGAATTTGTAAATGTATCTTTTCTCTATCCTACAAGGCCAACGGTATCTGTAGTGCAGCATGTCAGCTTTGTTGTGCAACCTAGTGAGGTGGTTGCAATCGTTGGTCTTAGTGGTAGTGGAAAAAGTACACTGGTGAACCTTTTGCTCCGTCTATATGAGCCAACAAATGGTCAGATTTTGATTGATGGCATCCCTCTTAAAGAGTTGGACATCATGTGGTGGAGAGAAAGAATTGGATTTGTGGGACAGGAACCTAAACTATTCAGAATGGATATTAGTTCAAATATCAAATACGGATGCACTCGAGATATAAAGCAAGAGGATGTTGAATGGGCTGCAAAGCAGGCCTATGCCCATGACTTCATCTCAGCACTTCCTAATGGTTATGAAACACTAGTCGATGATGATTTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGATCCAAAAATTTTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGTGTTCTTCGTTCTGTCAGAAGTGACTCCATGACCAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATAAAAGCAACTGACAGGATTGTGGTAATGGATGGTGGTAGGATTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTACAAGATGGTTTATATGCACGATTGACTAGTAAACAGGCTGATGCTGTGGAATGA 2121 0.4201 MALLVGGIQPQLLSFIRHERRKPFIRHSHRRFHFAANTKIRIVLSTSPFNPRLILVSPLKSASITGVSVQDNPEALSEDHSREEDHVDFLERLRRWFSFLPSILPGGSWWDFSEDVEVEGLAKPVTVWRALAKMWQLVAQDRWVILAAFSALILAAVSEISIPHFLTASIFSAQGAEITVFRRNVRLLVLFCITSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDTETVGDLTSRLGADCQQVSRVIGNDLNLILRNTLQGTGALIYLLALSWPLGLCTLVICSILSAVLLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVYGTEKEELGRYKCWLGNLADINLRQSASYGFWNFSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIFSTWWVGDSISSLMQSVGASEKVFHLMDLSPSRQLNAKGVKLQRLMGHIEFVNVSFLYPTRPTVSVVQHVSFVVQPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGIPLKELDIMWWRERIGFVGQEPKLFRMDISSNIKYGCTRDIKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSMTRRSVIVIAHRLSTIKATDRIVVMDGGRIVENGSHRELLLQDGLYARLTSKQADAVE 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1008 706 Gene3D ABC transporter type 1, transmembrane domain 290 458 IPR036640 GO:0005524|GO:0016020
Glsi09g1008 706 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524|GO:0016887
Glsi09g1008 706 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 146 427 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi09g1008 706 SMART AAA_5 488 677 IPR003593 GO:0016887
Glsi09g1008 706 FunFam ABC transporter B family member 26, chloroplastic 127 446 - -
Glsi09g1008 706 Pfam ABC transporter 480 627 IPR003439 GO:0005524
Glsi09g1008 706 CDD ABC_6TM_TAP 148 435 - -
Glsi09g1008 706 PANTHER ABC TRANSPORTER B FAMILY 137 697 IPR039421 -
Glsi09g1008 706 Gene3D ABC transporter type 1, transmembrane domain 113 289 IPR036640 GO:0005524|GO:0016020
Glsi09g1008 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 701 IPR027417 -
Glsi09g1008 706 FunFam Multidrug ABC transporter ATP-binding protein 453 705 - -
Glsi09g1008 706 Gene3D - 459 702 IPR027417 -
Glsi09g1008 706 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 461 700 IPR003439 GO:0005524
Glsi09g1008 706 SUPERFAMILY ABC transporter transmembrane region 133 441 IPR036640 GO:0005524|GO:0016020
Glsi09g1008 706 Pfam ABC transporter transmembrane region 152 413 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1008 Glsi-ChrGlsi09 7061082 7067429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1008 216 706 Calmodulin-binding Proteins AT2G36910 34.000 2.76e-72 253