Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0999 ATGGAAGAAGCACTGAGGCGGCTCAACGGGCTAGCCCCAATTCCAGAACCTGATCCGCAGGACTCCATCTCCGACCACCAGAAGAAGTGCCCTACCACCACCACCAACAAGAGGACTTTGAGAGAAAACGGAGCTGGCTCTGGTGGCACGATGAGGTATCGAGGAGTTAGGCGCAGGCCATGGGGCCGTTACGCGGCCGAGATTAGAGACCCACAGTCTAAGGAGCGCCGTTGGCTCGGTACCTTCGACACGGCTGAGGAAGCCGCCTGCGCTTACGACTGCGCCGCTAGAGCCATGCGTGGCCTTAAAGCTCGAACTAATTTCGTCTACCCAACTTCGCCTACTCCCTCTGCTTCTGAACATCTTTTCCCTCCTTTTACCTTCCCCAAACAATCTCAGCAGCACATTAACAAGAACCCCCATAACCGCCATTTGGGTTGGAGTTCTTACTCTAACCCTCATGTGGGTAACTTCGCAGCTGGTTCTTCAACAAACCAGTGCAACTCTACCCTGAACATGCTTCTCTTTCGTGACTACATTAACTCTTCTTCGAACCCTTCCTTGATTTCTCCTGCTCAGCAATTTTACGATCATCCCTTTTCCTACAACAAGGGCAGCTCTTCCACACCATCACCCACTTGTTCCTGTTCTTCGACATCCTTACCCACGTCTGGCTGCCTCCCAGGTTCCTGTTTAGTTAATTCTTCTGGTAGTAATATTAACAGTGTGAGTGGGTCTTCTTCAATTGTTATGAATACCCATCACAATTTTGATGTTGTCAGTACCAACGGAGCCAAAATTACTGAAGCTGATGAGGACTCGGAATTCTTTCCAGTAGAATCCTCAGACTCTGGATTGTTGGAAGAGATAGTTTATAGGTTCTTGCCAAAACCGAAGCCCGACCAATGCGAGACTCCACCAAAATCAGAGACTATGTCCACCCCACAGTTACTTCCTCAGCCAGTGGCTGATCACATGTTCGTTTCCACCACTCTCTGCTATGACAATATGAAAAGAGACCTTACTAAGAATGAAGATATTGGTGTCTCTTTTGATCACCAAGGTTTCCCAATGCAGCAATATGAGAGCTTTAATGGGTATTATACCCCGCAAGCTATACCTCTTAGGAACGACCACTTGATGATGAATAATGCAGAGTACTCCATCATGGAAGATATTTTTCAGTACCCAGATCTTCTTAATGAATTTGCAGCCAGGATGCAAAATGCTTAA 1233 0.4761 MEEALRRLNGLAPIPEPDPQDSISDHQKKCPTTTTNKRTLRENGAGSGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPTPSASEHLFPPFTFPKQSQQHINKNPHNRHLGWSSYSNPHVGNFAAGSSTNQCNSTLNMLLFRDYINSSSNPSLISPAQQFYDHPFSYNKGSSSTPSPTCSCSSTSLPTSGCLPGSCLVNSSGSNINSVSGSSSIVMNTHHNFDVVSTNGAKITEADEDSEFFPVESSDSGLLEEIVYRFLPKPKPDQCETPPKSETMSTPQLLPQPVADHMFVSTTLCYDNMKRDLTKNEDIGVSFDHQGFPMQQYESFNGYYTPQAIPLRNDHLMMNNAEYSIMEDIFQYPDLLNEFAARMQNA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0999 410 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Glsi09g0999 410 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Glsi09g0999 410 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Glsi09g0999 410 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Glsi09g0999 410 MobiDBLite consensus disorder prediction 1 54 - -
Glsi09g0999 410 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Glsi09g0999 410 MobiDBLite consensus disorder prediction 26 43 - -
Glsi09g0999 410 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Glsi09g0999 410 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 221 - -
Glsi09g0999 410 SUPERFAMILY DNA-binding domain 52 109 IPR016177 GO:0003677
Glsi09g0999 410 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Glsi09g0999 410 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0999 Glsi-ChrGlsi09 7020458 7021690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0999 50 314 AP2-EREBP Transcription Factor Family AT1G24590 38.951 2.69e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g0999 AP2 3.1e-12 CL0081