Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0992 ATGTGTATGAGTATAGAAGCAGTCAAGCAGAAAGCAGTAGAATCTGATATACAGATGATGTCTGGCTCCTCAGGCTTAATTACTCAATACCCAGTACCGGCTCCCACTCAAGTTGCCATTTTTTCCAGTGGGGTAATGGAATTCGAGAATCCAGAGGAGCAAGAGGAAGAGCTGGGTATCGACTCGTTGGGGATCTCTTCCCGAGTGAAAATGCCAGGCACGGGAGTTGCGGGGGATGCTATGATGTTGGGTCAGCCTGCCAGGAATAATAATAGTAAGGCCAGGTATAGGGAGTGCTTGAAAAACCACGCGGTGAGTATCGGTGGACACGCACTCGATGGCTGCGGGGAGTTCATGGCAGCCGGAGCTGAAGGCACGCTCGACGCTCTCAAATGCGCCGCCTGTAACTGCCACCGTAATTTTCACCGTAAAGAGACCGACACAATCGGCGTCGGAGCCGGGGAGCCTTATTTCTTGACCCACCACCACCCGCAGCAGTTCCCACCTTATTATCGGATGCCGGCGGGGTATTTACACATGGTGGGGCAGCAGAGGGGGGCAACGCTGGCGTTGCCGTCTACGTCGGGAGCAGGTGGCGGCACCCAGAGTACGAGAGAGGATCAAGAGGACGATGTTTCGAACCCAAGTGCAGGAGGAGGATCGAGGAAGAGGTTCAGGACCAAGTTCACGCTGGAACAGAAGGATAAAATGCTGGGATTGGCGGAAAGATTGGGATGGAGGATTCAGAAGCACGATGAGGCTGTGGTCCAGCAGTTCTGTAACGAAACCGGAGTGAAGCGTCAAGTTCTTAAGGTTTGGATGCATAATAACAAGCACACTCTGGTGTTTGGAGGTGAAGTTGGAAGGTGCGTTGGTGACTGTCTGAGAAGTCTATTACTAGCTCAGGATCTTAGGGTTTCTTTCTTCTTCTTCTCATTTATTGAGGAAATGGTTGGGACTTTAATCCTTTTGGTTGTGTTAATGTTTGACTTGCTTCTTGAGGAGGACAAGCTTAGGTATTACAAGTCAGGTTCAAGATGCTTTGCTTGTTTTGGGGGACTTCAGCATCAGTTAAAGCTGCATGCTTCAACTGTGGTCCATTATATGATGCAATCCTTGGTCAAACATTTAGGTTGA 1137 0.4996 MCMSIEAVKQKAVESDIQMMSGSSGLITQYPVPAPTQVAIFSSGVMEFENPEEQEEELGIDSLGISSRVKMPGTGVAGDAMMLGQPARNNNSKARYRECLKNHAVSIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKETDTIGVGAGEPYFLTHHHPQQFPPYYRMPAGYLHMVGQQRGATLALPSTSGAGGGTQSTREDQEDDVSNPSAGGGSRKRFRTKFTLEQKDKMLGLAERLGWRIQKHDEAVVQQFCNETGVKRQVLKVWMHNNKHTLVFGGEVGRCVGDCLRSLLLAQDLRVSFFFFSFIEEMVGTLILLVVLMFDLLLEEDKLRYYKSGSRCFACFGGLQHQLKLHASTVVHYMMQSLVKHLG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0992 378 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 95 145 IPR006456 -
Glsi09g0992 378 SUPERFAMILY Homeodomain-like 210 280 IPR009057 -
Glsi09g0992 378 NCBIfam homeobox domain, ZF-HD class 222 278 IPR006455 -
Glsi09g0992 378 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 96 145 IPR006456 -
Glsi09g0992 378 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 86 281 - -
Glsi09g0992 378 Gene3D - 207 282 - -
Glsi09g0992 378 MobiDBLite consensus disorder prediction 190 224 - -
Glsi09g0992 378 Pfam ZF-HD protein dimerisation region 94 146 IPR006456 -
Glsi09g0992 378 FunFam Zinc-finger homeodomain protein 2 209 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0992 Glsi-ChrGlsi09 6949631 6955046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0992 92 281 ZF-HD Transcription Factor Family AT4G24660 59.375 9.20e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi09g0992 ZF-HD_dimer 1.6e-29 No_clan