Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0985 ATGAAAATATTCGGTTTCGTTGATGATAGTAACTGTTCTGTTGGCCACAATCGTGATCAAGTGCGTATTAAATATGTCAAAGCTATTCCAAAGCCGCAAGGCATCCAGCAAATACGGAATTACTATAATTCAGATGCTCACATGATTAGAAGTAGCTTTGCTCGAGGAACCATCTCTCAGAGGTACAAAAACTCATTCCTAAAACCAAAATCAAAGGCAGAGATCAAATTACTCGGTGCTAAGAAACACAGTGAAGCAGAGAAGAGACGTAGGATGCGAATCAATGATCAATATGCCACCCTTCGCACCATTCTTCCCAACTTGGTCAAAATGGACAAGGCATCAGTGCTGGCTGAGACTATAAGACAAGTGAGGGAGCTGAAAAAGAGTGTATCAGAACTGGAAGCAGCTAGTCATGGTCGCTCAGAGGAGACTGTGTTTCCTAGTGAGGCAGACAAGCTGAACTTGGAACACTGTAATGAAGAGGAGGGCGTCATGAAGGCTACTTTGAGTTGTGAGGATAGGCCAGGATTGATGTCAGCCATCACAAGGGCGCTTAGATCTGTTAAAGCCAAGGTGGTAAAGGCTGAGATGGTGACGGTGGGAGGGAGGACCAGGAGTGTGCTATGGGTGCAGGGTTTGGGGAATGGAGAGGAAGGAATGAGGGTACTAAAGAGGACTCTGAAGGTTGTCATGCACAGGCCAACCTTTAAGATGCAGCGTCTGACTCAATAA 735 0.4558 MKIFGFVDDSNCSVGHNRDQVRIKYVKAIPKPQGIQQIRNYYNSDAHMIRSSFARGTISQRYKNSFLKPKSKAEIKLLGAKKHSEAEKRRRMRINDQYATLRTILPNLVKMDKASVLAETIRQVRELKKSVSELEAASHGRSEETVFPSEADKLNLEHCNEEEGVMKATLSCEDRPGLMSAITRALRSVKAKVVKAEMVTVGGRTRSVLWVQGLGNGEEGMRVLKRTLKVVMHRPTFKMQRLTQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0985 244 Coils Coil 117 137 - -
Glsi09g0985 244 SMART finulus 84 133 IPR011598 GO:0046983
Glsi09g0985 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 139 IPR036638 GO:0046983
Glsi09g0985 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 127 IPR011598 GO:0046983
Glsi09g0985 244 Gene3D - 79 139 IPR036638 GO:0046983
Glsi09g0985 244 Pfam Helix-loop-helix DNA-binding domain 82 127 IPR011598 GO:0046983
Glsi09g0985 244 CDD ACT_UUR-ACR-like 169 226 - -
Glsi09g0985 244 Gene3D - 167 240 - -
Glsi09g0985 244 SUPERFAMILY ACT-like 169 233 IPR045865 -
Glsi09g0985 244 PANTHER TRANSCRIPTION FACTOR BHLH30 63 236 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0985 Glsi-ChrGlsi09 6905765 6908675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0985 77 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.429 5.94e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0985 HLH 1.7e-09 No_clan