Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0982 ATGGCGAGGGAGAAGATTCAGATTAGGAAGATCGACAATGCCACGGCAAGGCAGGTGACGTTCGCGAAGCGACGCAGAGGACTCTTCAAAAAGGCAGAGGAGCTTTCAGTTCTTTGTGACGCAGATGTTGCTCTCATAGTCTTCTCTTCTACTGGGAAGCTCTTCGAGTACTCCAGTTCAAGCATGAAGGAAGTACTTGAAAGGCATCATTTGCACTCGAAGAACCTCGCAAAGATGGACCAACCGTCTCTTGAGTTGCAGCTGGTGGAGGACAGCAACTGCTCCAGAATGAGCAAGGAAATTGCTGAAAAGAGCCATCAACTAAGGCAGATGAGAGGAGAGGATCTTCAAGGTTTAAGTATTGAAGAATTACAGCAACTAGAGAGGTCCCTCGAAGCTGGGTTGGACCGTGTAACAGAAGAGAAGGGGCAGAAGACTCTGAATGAGATCAGTGATCTCCAAAGAAAGGGAATGCAACTGATGGAAGAGAACAAGCTTTTGAGGCTTCAGGTGACAGAAATATCTAGTGACAACAGAGAAAATGGGGGCGAATACGATAACTTCGTTACCGAGGAAGTTCAGTCATCGGAGTCTGTCGGTGACTTCTGCAACCCCGCTGGGCCTTCTCAAGACTATGATAACTCAGACACGTCTCTCAAATTGGGGTTACCATACCCTGGCTGA 684 0.4781 MAREKIQIRKIDNATARQVTFAKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFEYSSSSMKEVLERHHLHSKNLAKMDQPSLELQLVEDSNCSRMSKEIAEKSHQLRQMRGEDLQGLSIEELQQLERSLEAGLDRVTEEKGQKTLNEISDLQRKGMQLMEENKLLRLQVTEISSDNRENGGEYDNFVTEEVQSSESVGDFCNPAGPSQDYDNSDTSLKLGLPYPG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0982 227 Coils Coil 121 141 - -
Glsi09g0982 227 FunFam Transcription factor, MADS-box 13 83 - -
Glsi09g0982 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi09g0982 227 MobiDBLite consensus disorder prediction 177 217 - -
Glsi09g0982 227 MobiDBLite consensus disorder prediction 177 227 - -
Glsi09g0982 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi09g0982 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi09g0982 227 Pfam K-box region 93 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi09g0982 227 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Glsi09g0982 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Glsi09g0982 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi09g0982 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Glsi09g0982 227 Coils Coil 150 170 - -
Glsi09g0982 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Glsi09g0982 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi09g0982 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi09g0982 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi09g0982 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0982 Glsi-ChrGlsi09 6870265 6874139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0982 1 227 MADS-box Gene Family AT2G22540 68.750 1.12e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi09g0982 K-box 1.8e-17 No_clan