LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0967	ATGCCCACCAACCCGGACCCCACAGAAACAGACCTCAAGGCAAGAAAGGTGCATGTAAGACAGGTTAATTCTTGTACATCTGAAACTTATTTTCATGGGTCTGCGTCGATGTTTGTAGGCTGGACCAACTCCAGGCCGCAGGTGTTGTACGGCCAAGTAGAGCAAAACCAAAGCAAAGAAAGCCAACCGCAGAACATGGTGGAATCAACATTTCTCACAAGCTTCATGGAATCACAAAATCAGAACCAGCCAGTGCCGAAGCTCGAGGACTTTTTGGGTGATTCTTCATCCATGATGCGTTACACCGATAGCCAAACGGAAACCCAAGATTCGTCATTGACCCAGATATACGACCAAAGCTCGGCCTACTTCAGCGACCAGCAAGATCTGAAAGCAATTGCTGGGTTTCAAACTTTCTCCACCAACTCCGGCTCCGAAGTGGATGACTCAGCCTCAATCGGAAAAACTCAGACTACTTGTGGCGATTATGCAGCTCACTCGATTGAGTCATCAGGGAACGAGTTGGCCTTCTCTAGTTGCACCCCGGGCACTTTGTCGCTCGGTGTCACACAGTGTTCAGAGAAGGCCATTGCTGCCGCGGATTCTGATAGCTCAAAAAAGATCGCCGATACTTTTGGCCAGCGAACTTCAATTTACAGAGGAGTCACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTCTGGGATAACAGCTGTAGAAGAGAGGGCCAGGCGAGGAAAGGGCGTCAAGGTATTAATGGTTGGGGAGGTAGGACACCTGGGTTTCTTTCTCATCAGTCTTTTATGATTGACCCTGATGGTGGATATGACAAGGAAGAAAAGGCCGCGAGAGCATACGATTTGGCAGCTCTAAAGTACTGGGGCCCCACTGCTACCACCAACTTCCCTGTTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATGTAACGAAGCAGGAATTTATTGCATCACTTCGAAGGAAAAGTAGCGGTTTTTCCAGGGGAGCTTCTATATACAGGGGTGTTACAAGGCATCATCAACAAGGTAGATGGCAAGCAAGAATCGGTCGTGTTGCAGGGAACAAAGATCTATACCTTGGAACATTTGCCACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCTGCCATAAAGTTTAGGGGGGCAAATGCTGTGACCAATTTTGAGATGAGTAGATATGATGTTGAAGCTATCATGAAGAGCTCCCTTCCCATAGGCGGGGCAGCAAAACGCTTGAAGCTTTCCCTAGAGTCAGAGCAGAAAGCTTCTCTGAACAGTAATCAGCAAGCCCAATGTACAAACGTGAGTAGCAGTATCAACTTTTCACCCATTCAGCCAGTTGCTGCTTCTATCCCTTGTGGAATACCGTTTGATTCTGCAACAGCATATTATCACCCCAGCCTCTTCCACCATTTTCATCCCGGCAACGCTGGCACTGTAGACTCTGCCATATCTACACCTACTGCAACTCCGTTGACTGCTCTGCCTGCAGCGGCTGAGTTTTTTATATGGCCTCCTCATCAGTCCTATTGA	1560	0.4795	MPTNPDPTETDLKARKVHVRQVNSCTSETYFHGSASMFVGWTNSRPQVLYGQVEQNQSKESQPQNMVESTFLTSFMESQNQNQPVPKLEDFLGDSSSMMRYTDSQTETQDSSLTQIYDQSSAYFSDQQDLKAIAGFQTFSTNSGSEVDDSASIGKTQTTCGDYAAHSIESSGNELAFSSCTPGTLSLGVTQCSEKAIAAADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGINGWGGRTPGFLSHQSFMIDPDGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVEAIMKSSLPIGGAAKRLKLSLESEQKASLNSNQQAQCTNVSSSINFSPIQPVAASIPCGIPFDSATAYYHPSLFHHFHPGNAGTVDSAISTPTATPLTALPAAAEFFIWPPHQSY	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0967	519	FunFam	AP2-like ethylene-responsive transcription factor	339	400	-	-
	Glsi09g0967	519	Gene3D	AP2/ERF domain	340	400	IPR036955	GO:0003700\|GO:0006355
	Glsi09g0967	519	Gene3D	AP2/ERF domain	218	306	IPR036955	GO:0003700\|GO:0006355
	Glsi09g0967	519	PRINTS	Ethylene responsive element binding protein signature	286	306	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	PRINTS	Ethylene responsive element binding protein signature	219	230	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	CDD	AP2	339	400	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	SMART	rav1_2	218	310	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	SMART	rav1_2	340	404	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	SUPERFAMILY	DNA-binding domain	339	400	IPR016177	GO:0003677
	Glsi09g0967	519	SUPERFAMILY	DNA-binding domain	217	306	IPR016177	GO:0003677
	Glsi09g0967	519	ProSiteProfiles	AP2/ERF domain profile.	340	398	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	CDD	AP2	217	306	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	ProSiteProfiles	AP2/ERF domain profile.	218	304	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0967	519	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	79	440	-	-
	Glsi09g0967	519	Pfam	AP2 domain	340	390	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0967	Glsi-ChrGlsi09	6781839	6787250	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0967	41	519	AP2-EREBP Transcription Factor Family	AT5G10510	55.872	4.83e-175	503

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi09g0967		AP2	2.3e-10	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi05g0960	05	59656678	59661319	Glsi09g0967	09	6781839	6787250	CCT