Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0966 ATGGAATCAGTAAGTACCCACAAAAGGGGATTTTCATGTGAAGATGAGCCATCTCCCAGGGGCGTATTGGAAATTCCTGTTTCGGGTACACACTCAGACCGTAGTGGAAGCAGCAGTTGCAGCTCTTGTTCACCGGAGAAGTCGTCGGCGGAAAGGCCAGCGGTTGGCCATGGGCAGCAATGGAAGGCTATGCTAGACGTGTTCAGGACGAACTCTGTCCGAAAACTTTCAGCGATTCCAATGTTTGCGGCGAGTTACGTGATATCTAGGAATAGCTTGAAGAAACTAGCTCGTATTAGAAGCGCTGAAGATACTATCGATCTTAGTTCTTTTCCTACAAAACCTTCTTGGAGAAACTTCCCTTACGCAGAGCTCGTTGCAGCTACGGACGATTTCAGTCCCGAGAACTTAGTTGGGAAAGGTGGGCATGCTGAAGTCTACAAAGGACGCTTAGTGGATGGTCAAATTGTAGCAGTAAAGAAGCTAGTGAAAGAAGAAAAGGATGATGCGGACAAGGACAGTACGGGTGATTTCTTGACAGAGCTAGGGATTATTGCCCATATCAACCATCCTAATGCAGCACATTTGATCGGGTTTGGAATTGAGAATGGCCTCTTCTTTGTCCTACAATTTGCCCCACATGGCAGCCTTGCCTCTCTGCTTTTTGGTTCAGAAAAGATGGAGTGGAAAATAAGGTTCAAGGTAGCTATTGGGGTAGCAGAGGGATTGCAGTATCTCCATCATGAGTGCCCAAGAAGAATCATTCACAGAGACATCAAGGCCTCTAACATATTACTTCACCAAGATTATGAAGCTGAGATTTCAGATTTTGGACTGGCTAAGTGGCTTCCAGATAAATGGGACCATCATGTTGTCTTCCCGATAGAGGGCACATTCGGGTATCTGGCCCCAGAATATTTTATGCATGGAATTGTGGATGAGAAGACAGATGTATTTGCATTTGGGGTTTTGTTACTGGAGCTCATCACAGGTCGTCGTGCAGTTGATTCCAGTAGTAGGCAAAGTCTCGTGATCTGGGCAAAGCCACTGCTAGACATGGACAATGTACAGGAACTAGCAGACCCGAGATTAGAAGAGGCTTACGATTCCACTGAAATGAAGCGTGTCATGGTGACGGCTTGCATGTGTGTTCACCACTTACCCTCCAATCGCCCATTCATGAATCAGGTAGTGAAGTTACTGAAAGGCGAAGAGGGAGCACTTGAATTGAAGCAAAAATCGATAGCTTCAAGATCGCTTCTGGTGGATGCCTGTGACCTAGAGGATTATACTTGCTCCAATTACTTGAACGATCTCAATCGTCACAGGCAACTACTCATGGAGTGA 1347 0.461 MESVSTHKRGFSCEDEPSPRGVLEIPVSGTHSDRSGSSSCSSCSPEKSSAERPAVGHGQQWKAMLDVFRTNSVRKLSAIPMFAASYVISRNSLKKLARIRSAEDTIDLSSFPTKPSWRNFPYAELVAATDDFSPENLVGKGGHAEVYKGRLVDGQIVAVKKLVKEEKDDADKDSTGDFLTELGIIAHINHPNAAHLIGFGIENGLFFVLQFAPHGSLASLLFGSEKMEWKIRFKVAIGVAEGLQYLHHECPRRIIHRDIKASNILLHQDYEAEISDFGLAKWLPDKWDHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSSSRQSLVIWAKPLLDMDNVQELADPRLEEAYDSTEMKRVMVTACMCVHHLPSNRPFMNQVVKLLKGEEGALELKQKSIASRSLLVDACDLEDYTCSNYLNDLNRHRQLLME 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0966 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Glsi09g0966 448 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 109 211 - -
Glsi09g0966 448 MobiDBLite consensus disorder prediction 1 15 - -
Glsi09g0966 448 Pfam Protein kinase domain 135 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0966 448 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Glsi09g0966 448 Gene3D Phosphorylase Kinase; domain 1 106 210 - -
Glsi09g0966 448 MobiDBLite consensus disorder prediction 1 56 - -
Glsi09g0966 448 ProSiteProfiles Protein kinase domain profile. 132 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0966 448 Gene3D Transferase(Phosphotransferase) domain 1 213 420 - -
Glsi09g0966 448 PANTHER OS08G0249100 PROTEIN 13 418 IPR046958 -
Glsi09g0966 448 MobiDBLite consensus disorder prediction 30 48 - -
Glsi09g0966 448 SUPERFAMILY Protein kinase-like (PK-like) 111 401 IPR011009 -
Glsi09g0966 448 SMART serkin_6 132 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0966 448 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 213 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0966 Glsi-ChrGlsi09 6777011 6780517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0966 98 445 Trihelix Transcription Factor Family AT1G70460 39.665 1.31e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi09g0966 Pkinase 8.6e-40 CL0016