Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0942 ATGTCGAACGTTGAGGAAAAAGTTGATGCCTTTGGATGGGCAGCTAGAGACACCTCGGGAATCCTCTCCCCCTTCCACTTTAGCAGAAGGGAAAATGGTGATACTGACATCACCATCAGGATACTGTATTCTGGGATATGCCATACCGACCTCCATTTTCTCAAGGATGACTTTGGCACGACCATCTATCCCATTGTTCCCGGGCACGAGATTGTGGGAGAAGTGATAAAAGTGGGTCGCAGTGTCACCAAATTTAGCGTTGGTGACATAGCTGGTGTGAGTACAGTTGTGGGTTCGTGTGGCTCCTGCTCTGACTGCGCCCAGGGCCTTGAAGTTTATTGTCCAAAAGTGATTTTAACCTATAGTGCACGAGACCATGACGGATCAATAACCCAAGGTGGATTCTCTGATAAGATCGTGATGGACGAGCACTTCGCGGTGGTGATTCCGAACACTTTGGCACTAGATGCTGCAGCCCCGTTACTTTGTGCTGGAATCGCAGTATACAACCCCATGAAGTCTTTTGGACTAACTCAGACTGGGTTGCATTTGGGCGTGGTAGGCCTGGGTGGACTTGGTCATGTGGCTGTCCAGTTTGCCAAAGCTTTTAACATGAAGGTCACAGTGATAAGTACATCTCCGAGGAAGAAGGTAGAGGCATTGGAACGTTTTGGTGCCGATGCCTTCTTAGTCAGCCAAGACCAAGAACAGCTGCAGGATGCCATGGGCACAATGGACGGAATCCTTGACACAGTTTCAGGCCCACACTCTCTCATGCCATTAGTTGGTTTGCTGAAGACACATGGAAAGTTGATTCTGCTGGGTGCACCGTCCTCGCCGCTTGAGTTTTCGGCTGCGCCTTTACTTGCGGGGGGGAAGATGATCGCAGGGAGTGCAGGGGGAGGGAGCAAATACATGCAAGAGATGATGGATTTTGCAGCAAAGCACAATATTAGTGCGGATGTGGAGGTCATTCCAATGGACTACGTCAACACTGCCTTACACCGACTTGCAAATAATGATGTAAAGTACCGATTTGTCATTGATGTGGCAAGTACAATCAAATATCCAACAAAAAATTAA 1083 0.4848 MSNVEEKVDAFGWAARDTSGILSPFHFSRRENGDTDITIRILYSGICHTDLHFLKDDFGTTIYPIVPGHEIVGEVIKVGRSVTKFSVGDIAGVSTVVGSCGSCSDCAQGLEVYCPKVILTYSARDHDGSITQGGFSDKIVMDEHFAVVIPNTLALDAAAPLLCAGIAVYNPMKSFGLTQTGLHLGVVGLGGLGHVAVQFAKAFNMKVTVISTSPRKKVEALERFGADAFLVSQDQEQLQDAMGTMDGILDTVSGPHSLMPLVGLLKTHGKLILLGAPSSPLEFSAAPLLAGGKMIAGSAGGGSKYMQEMMDFAAKHNISADVEVIPMDYVNTALHRLANNDVKYRFVIDVASTIKYPTKN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0942 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Glsi09g0942 360 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Glsi09g0942 360 SUPERFAMILY GroES-like 19 181 IPR011032 -
Glsi09g0942 360 Gene3D - 13 350 - -
Glsi09g0942 360 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Glsi09g0942 360 PANTHER ALDEHYDE REDUCTASE 5 353 IPR047109 GO:0016616
Glsi09g0942 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Glsi09g0942 360 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Glsi09g0942 360 CDD CAD1 11 349 IPR047109 GO:0016616
Glsi09g0942 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Glsi09g0942 360 Gene3D - 164 320 - -
Glsi09g0942 360 Pfam Alcohol dehydrogenase GroES-like domain 35 147 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0942 Glsi-ChrGlsi09 6548507 6549931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0942 1 360 Monolignol Biosynthesis Gene Families AT4G37990 59.444 3.09e-140 400